Wollmann, P.; Zeth, K.; Lupas, A.; Linke, D.: Purification of the YadA membrane anchor for secondary structure analysis and crystallization. International Journal of Biological Macromolecules 39 (1-3), S. 3 - 9 (2006)

Biegert, A.; Mayer, C.; Remmert, M.; Söding, J.; Lupas, A.: The MPI Bioinformatics toolkit for protein sequence analysis. Nucleic Acids Research (London) 34 (Web Server issue), S. W335 - W339 (2006)

Söding, J.; Remmert, M.; Biegert, A.: HHrep: de novo protein repeat detection and the origin of TIM barrels. Nucleic Acids Research (London) 34 (Web Server issue), S. W137 - W142 (2006)

Söding, J.; Remmert, M.; Biegert, A.; Lupas, A.: Why do crosses between closely related species fail? Recent results suggest that mis-regulation of gene silencing contributes to hybrid failure. Nucleic Acids Research (London) 34 (Web Server issue), S. W374 - W378 (2006)

Söding, J.; Remmert, M.; Biegert, A.; Lupas, A.: HHsenser: Exhaustive transitive profile search using HMM-HMM comparison. Nucleic Acids Research (London) 34 (Web Server issue), S. W374 - W378 (2006)

Linke, D.; Riess, T.; Autenrieth, I.; Lupas, A.; Kempf, V.: Trimeric autotransporter adhesins: variable structure, common function. Trends in Microbiology 14 (6), S. 264 - 270 (2006)

Fiegna, F.; Yu, Y.-T.; Kadam, S.; Velicer, G.: Evolution of an obligate social cheater to a superior cooperator. Nature 441 (7091), S. 310 - 314 (2006)

Velicer, G.; Raddatz, G.; Keller, H.; Deiss, S.; Lanz, C.; Dinkelacker, I.; Schuster, S.: Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor. Proceedings of the National Academy of Sciences of the United States of America 103 (21), S. 8107 - 8112 (2006)

Albrecht, R.; Zeth, K.; Söding, J.; Lupas, A.; Linke, D.: Expression, crystallization and preliminary X-ray crystallographic studies of the outer membrane protein OmpW from Escherichia coli. Acta Crystallographica Section F: Structural Biology and Crystallization Communications 62 (4), S. 415 - 418 (2006)

Wildemann, D.; Erdmann, F.; Hernandez Alvarez, B.; Stoller, G.; Zhou, X.; Fanghänel, J.; Schutkowski, M.; Lu, K.; Fischer, G.: Nanomolar inhibitors of the peptidyl prolyl cis/trans isomerase Pin1 from combinatorial peptide libraries. Journal of Medicinal Chemistry 49 (7), S. 2147 - 2150 (2006)

Tonning, A.; Helms, S.; Schwarz, H.; Uv, A.; Moussian, B.: Hormonal regulation of mummy is needed for apical extracellular matrix formation and epithelial morphogenesis in Drosophila. Development 133 (2), S. 331 - 341 (2006)

Gruber, M.; Söding, J.; Lupas, A.: REPPER-repeats and their periodicities in fibrous proteins. Nucleic Acids Research (London) 33 (Web Server issue), S. W239 - W243 (2005)

Moussian, B.; Söding, J.; Schwarz, H.; Nüsslein-Volhard, C.: Retroactive, a membrane-anchored extracellular protein related to vertebrate snake neurotoxin-like proteins, is required for cuticle organization in the larva of Drosophila melanogaster. Developmental Dynamics 233 (3), S. 1056 - 1063 (2005)

Söding, J.; Biegert, A.; Lupas, A.: The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Research (London) 33 (Web Server issue), S. W244 - W248 (2005)

Coles, M.; Djuranovic, S.; Söding, J.; Frickey, T.; Koretke, K.; Truffault, V.; Martin, J.; Lupas, A.: AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels. Structure 13 (6), S. 919 - 928 (2005)

Söding, J.: Protein homology detection by HMM-HMM comparison. Bioinformatics 21 (7), S. 951 - 960 (2005)

Frickey, T.; Lupas, A.: CLANS: a Java application for visualizing protein families based on pairwise similarity. Bioinformatics 20 (18), S. 3702 - 3704 (2004)

Proikas-Cezanne, T.; Waddell, S.; Gaugel, A.; Frickey, T.; Lupas, A.; Nordheim, A.: WIPI-1alpha (WIPI49), a member of the novel 7-bladed WIPI protein family, is aberrantly expressed in human cancer and is linked to starvation-induced autophagy. Oncogene 23 (58), S. 9314 - 9325 (2004)

Riess, T.; Andersson, S.; Lupas, A.; Schaller, M.; Schäfer, A.; Kyme, P.; Martin, J.; Wälzlein, J.-H.; Ehehalt, U.; Lindroos, H. et al.; Schirle, M.; Nordheim, A.; Autenrieth, I.; Kempf, V.: Bartonella adhesin a mediates a proangiogenic host cell response. Journal of Experimental Medicine 200 (10), S. 1267 - 1278 (2004)

Santos, L.; Frickey, T.; Peters, J.; Baumeister, W.; Lupas, A.; Zwickl, P.: Thermoplasma acidophilum TAA43 is an archaeal member of the eukaryotic meiotic branch of AAA ATPases. Biological Chemistry 385 (11), S. 1105 - 1111 (2004)