Dreidimensionale Strukturen

Röntgenkristallographie, NMR-Spektroskopie und Computermethoden

Strukturen, die durch Röntgenkristallographie, NMR-Spektroskopie und Berechnungsmethoden gewonnen wurden.

Röntgenkristallographische Strukturen

Name Beschreibung (engl.) Download RSCB PDB
Cereblon Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Thalidomide, Y101F mutant 4V32.pdb PDB
Cereblon Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Deoxyuridine 4V31.pdb PDB
Cereblon Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Lenalidomide 4V30.pdb PDB
Cereblon Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Thalidomide 4V2Y.pdb PDB
NAGK-PII N-acetylglutamate kinase from Arabidopsis thaliana in complex with PII from Chlamydomonas reinhardtii 4USJ.pdb PDB
PII-MgATP-2og Nitrogen regulatory protein PII from Chlamydomonas reinhardtii in complex with MgATP and 2-oxoglutarate 4USI.pdb PDB
PII Nitrogen regulatory protein PII from Chlamydomonas reinhardtii in unliganded state 4USH.pdb PDB
Af1503-sol Transmembrane receptor Af1503 from Archaeoglobus fulgidus engineered for solubility 4CQ4.pdb PDB
Af1503-Tsr Structure of Hamp(AF1503) - Tsr fusion - Hamp (A291V) mutant 3ZX6.pdb PDB
FtsH-N Escherichia coli FtsH hexameric N-domain 4V0B.pdb PDB
ANDREI-N-LVPAS ANDREI-N-LVPAS fused to CGN4 adaptors 4C46.pdb PDB
SadB Salmonella enterica trimeric lipoprotein SadB 4C47.pdb PDB
SadA K2 Salmonella enterica SadA 303-358 fused to GCN4 adaptors 3ZMF.pdb PDB
SadA K14 Salmonella enterica SadA 1185-1386 fused to GCN4 adaptors 3YO3.pdb PDB
SadA K12 Salmonella enterica SadA 255-358 fused to GCN4 adaptors 2YO2.pdb PDB
SadA K9-cfII Salmonella enterica SadA 1049-1304 fused to GCN4 adaptors 2YO1.pdb PDB
SadA K9-cfI Salmonella enterica SadA 1049-1304 fused to GCN4 adaptors 2YO0.pdb PDB
SadA K5 Salmonella enterica SadA 823-947 fused to a GCN4 adaptor 2YNZ.pdb PDB
SadA K1 Salmonella enterica SadA 255-302 fused to GCN4 adaptors  2YNY.pdb PDB
EIBD E. coli IgG-binding fragment 160-418 of trimeric autotransporter adhesin  2XQH.pdb PDB
EIBD E. coli IgG-binding protein D 391-438 fused to GCN4 adaptors  2XZR.pdb PDB
HAMP mutant The mechanisms of HAMP-mediated signaling in transmembrane receptors-A291I mutant 2Y20.pdb PDB
HAMP mutant The mechanisms of HAMP-mediated signaling in transmembrane receptors-A291V mutant 2Y21.pdb PDB
HAMP mutant The mechanisms of HAMP-mediated signaling in transmembrane receptors-A291F mutant 2Y0T.pdb PDB
HAMP mutant The mechanisms of HAMP-mediated signaling in transmembrane receptors-A291C mutant 2Y0Q.pdb PDB
KH-CPSF Crystal structure of a dimeric archaeal cleavage and polyadenylation specificity factor 2XR1.pdb PDB
HAMP mutant The high resolution structure of a dimeric Hamp-Dhp fusion displays strong asymmetry 3ZRX.pdb PDB
HAMP mutant The structure of the dimeric Hamp-Dhp fusion A291V mutant 3ZRW.pdb PDB
HAMP mutant The high resolution structure of a dimeric Hamp-Dhp fusion displays asymmetry 3ZRV.pdb PDB
yadA M4 Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes. 3LT6.pdb PDB
yadA M3 Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes. 3LT7.pdb PDB
yadA M1 Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes. 3H7Z.pdb PDB
yadA Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes. 3H7X.pdb PDB
CGN4 mutant CGN4 leucine zipper mutant with three IXXNTXX motifs coordinating chloride and nitrate 2WQ3.pdb PDB
CGN4 mutant CGN4 leucine zipper mutant with three IXXNTXX motifs coordinating iodide 2WQ2.pdb PDB
CGN4 mutant CGN4 leucine zipper mutant with three IXXNTXX motifs coordinating bromide 2WQ1.pdb PDB
CGN4 mutant CGN4 leucine zipper mutant with three IXXNTXX motifs coordinating chloride 2WQ0.pdb PDB
CGN4 mutant CGN4 leucine zipper mutant with two VXXNXXX motifs coordinating chloride 2WPZ.pdb PDB
CGN4 mutant CGN4 leucine zipper mutant with one VXXNXXX motif coordinating chloride 2WPY.pdb PDB
Sada K3B-V2 Salmonella Enterica Sada 483-523 fused to CGN-4 adaptors 2WPS.pdb PDB
Sada K3B-V1 Salmonella Enterica Sada 483-523 fused to CGN-4 adaptors 2WPR.pdb PDB
Sada K3 Salmonella Enterica Sada 479-519 fused to CGN-4 adaptors 2WPQ.pdb PDB
ARC-N ARC-NΔcc (78-227) from Rhodococcus erythropolis 2WFW.pdb PDB
PAN-N Proteasome-activating nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN4 2WG5.pdb PDB
PAN-N (P61A) Proteasome-activating nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN4 2WG6.pdb PDB
SpoVT-FL Crystal Structure of B. Subtilis SpoVT 2W1T.pdb PDB
SpoVT-CT domain Crystal Structure of the C-Terminal Domain of B. Subtilis SpoVT 2W1R.pdb PDB
BadA Structure of two domains of the head of the Bartonella adhesin BadA 3D9X.pdb PDB
Mj0056 Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with PO4 2VBS.pdb PDB
Mj0056 Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with CDP and PO4 2VBT.pdb PDB
Mj0056 Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with CDP 2VBU.pdb PDB
Mj0056 Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with CDP and FMN 2VBV.pdb PDB

NMR-Strukturen

Name Beschreibung (engl.) Download RSCB PDB
Yme1-N The N-domain of the AAA metalloproteinase Yme1 from Saccharomyces cerevisiae 2MV3.pdb PDB
FtsH-N The solution structure of the FtsH periplasmic N-domain 2MUY.pdb PDB
A291F variant The solution structure of the HAMP domain of the hypothetical transmembrane receptor Af1503  2L7I.pdb PDB
Af1503 HAMP The solution structure of the HAMP domain of the hypothetical transmembrane receptor Af1503 2L7H.pdb PDB
A219F var Solution structure of the chimeric Af1503 HAMP-EnvZ DHp homodimer; A219F variant 2LFS.pdb PDB
DHp HomDim Solution structure of the chimeric Af1503 HAMP-EnvZ DHp homodimer 2LFR.pdb PDB
Mj0056 Solution structure of Mj0056 2P3M.pdb PDB
PhS018 The solution structure of PHS018 from Pyrococcus horikoshii (22 models) 2GLW.pdb PDB
AbrB The Solution Structure Of The N-Domain Of The Transcription Factor AbrB (22 models) 1YSF.pdb PDB
AbrB The Solution Structure Of The N-Domain Of The Transcription Factor AbrB (mean) 1YFB.pdb PDB

Berechnungsmodelle

Name Beschreibung (engl.) Download
Plasm.Hsp101 Hexameric model of Plasmodium Hsp101 assembled from monomers modeled by homology to 1QVR PfClpB-6mer.pdb
Thermus ClpB Hexameric model of Thermus thermophilus ClpB based on the monomeric structure 1QVR ClpBmod.pdb
Apoptosome Ring model of the apoptosome. The monomer of Apaf-1 (1Z6T) was modeled as a heptameric ring structure and placed in the center of the domain model by C. Akey and coworkers (PubMed) Apopt.mod.pdb
BadA Model structure of the full head of the BadA fiber BadAhmod.pdb
YadA New model structure of the full YadA fiber YadAmodv2.pdb
YadA Old model structure of the full YadA fiber YadAmod.pdb
OmpW Model structure of the outer membrane beta barrel protein OmpW OmpW mod.pdb
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