Publications of the Institute

Coban, A.; Bornberg-Bauer, E.; Kemena, C.: Domain Evolution of Vertebrate Blood Coagulation Cascade Proteins. Journal of Molecular Evolution: the Journal of the International Society of Molecular Evolution 90 (6), pp. 418 - 428 (2022)

Das, O.; Kundu, J.; Ghosh, A.; Gautam, A.; Ghosh, S.; Chakraborty, M.; Masid, A.; Gauri, S.; Mitra, D.; Dutta, M. et al.; Mukherjee, B.; Sinha, S.; Bhaumik, M.: AUF-1 knockdown in mice undermines gut microbial butyrate-driven hypocholesterolemia through AUF-1–Dicer-1–mir-122 hierarchy. Frontiers in Cellular and Infection Microbiology 12, 1011386 (2022)

Heim, C.; Spring, A.-K.; Kirchgäßner, S.; Schwarzer, D.; Hartmann, M.: Identification and structural basis of C-terminal cyclic imides as natural degrons for cereblon. Biochemical and Biophysical Research Communications 637, pp. 66 - 72 (2022)

Igreja, C.; Loschko, T.; Schäfer, A.; Sharma, R.; Quiobe, S.; Aloshy, E.; Witte, H.; Sommer, R.: Application of ALFA-Tagging in the Nematode Model Organisms Caenorhabditis elegans and Pristionchus pacificus. Cells 11 (23), 3875 (2022)

Krasavin, M.; Adamchik, M.; Bubyrev, A.; Heim, C.; Maiwald, S.; Zhukovsky, D.; Zhmurov, P.; Bunev, A.; Hartmann, M.: Synthesis of novel glutarimide ligands for the E3 ligase substrate receptor Cereblon (CRBN): Investigation of their binding mode and antiproliferative effects against myeloma cell lines. European Journal of Medicinal Chemistry 246, 114990 (2022)

Krasavin, M.; Bubyrev, A.; Kazantsev, A.; Heim, C.; Maiwald, S.; Zhukovsky, D.; Dar'in, D.; Hartmann, M.; Brunev, A.: Replacing the phthalimide core in thalidomide with benzotriazole. Journal of Enzyme Inhibition and Medicinal Chemistry 37 (1), pp. 527 - 530 (2022)

Kreiner, J.; Latorre, S.; Burbano, H.; Stinchcombe, J.; Otto, S.; Weigel, D.; Wright, S.: Rapid weed adaptation and range expansion in response to agriculture over the past two centuries. Science 378 (6624), pp. 1079 - 1085 (2022)

Lo, W.-S.; Roca, M.; Dardiry, M.; Mackie, M.; Eberhardt, G.; Witte, H.; Hong, R.; Sommer, R.; Lightfoot, J.: Evolution and Diversity of TGF-β Pathways are Linked with Novel Developmental and Behavioral Traits. Molecular Biology and Evolution 39 (12), msac252 (2022)

Lundberg, D.; de Pedro Jové, R.; Na Ayutthaya, P.; Karasov, T.; Shalev, O.; Poersch, K.; Ding, W.; Bollmann-Giolai, A.; Bezrukov, I.; Weigel, D.: Contrasting patterns of microbial dominance in the Arabidopsis thaliana phyllosphere. Proceedings of the National Academy of Sciences of the United States of America 119 (52), e2211881119 (2022)

McCann, H.; Sage, R.: Seed size effects on plant establishment under low atmospheric CO2, with implications for seed size evolution. Annals of Botany 90 (6), mcac112, pp. 825 - 834 (2022)

McManus, C.; Bouchery, T.; Suleiman, M.; Kildemoes, A.; Ferguson, A.; Wang, T.; Finlay, C.; Chan, R.; Renahan, T.; Mukundan, A. et al.; Nkurunungi, G.; Bobardt, S.: Hydra 2022: return of the interactive conference on helminth parasitology after the pandemic. Trends in Parasitology 38 (12), pp. 999 - 1007 (2022)

Ruaud, A.; Pfister, N.; Ley, R.; Youngblut, N.: Interpreting tree ensemble machine learning models with endoR. PLoS Computational Biology 18 (12), e1010714 (2022)

Schulze, S.; Yu, L.; Hua, C.; Zhang, L.; Kolb, D.; Weber, H.; Ehinger, A.; Saile, S.; Stahl, M.; Franz-Wachtel, M. et al.; Lei, L.; El Kasmi, F.; Nürnberger, T.; Cevik, V.; Kemmerling, B.: The Arabidopsis TIR-NBS-LRR protein CSA1 guards BAK1-BIR3 homeostasis and mediates convergence of pattern- and effector-induced immune responses. Cell Host & Microbe 30 (12), pp. 1717 - 1731 (2022)

Srikant, T.; Yuan, W.; Berendzen, K.; Contreras Garrido, A.; Drost, H.-G.; Schwab, R.; Weigel, D.: Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation. Genome Biology 23 (1), 263 (2022)

Stahlecker, J.; Klett, T.; Schwer, M.; Jaag, S.; Dammann, M.; Ernst, L.; Braun, M.; Zimmermann, M.; Kramer, M.; Lämmerhofer, M. et al.; Stehle, T.; Coles, M.; Boeckler, F.: Revisiting a challenging p53 binding site: a diversity-optimized HEFLib reveals diverse binding modes in T-p53C-Y220C. RSC Medicinal Chemistry 13 (12), pp. 1575 - 1586 (2022)

Weber, R.; Kleemann, L.; Hirschberg, I.; Chung, M.-Y.; Valkov, E.; Igreja, C.: DAP5 enables main ORF translation on mRNAs with structured and uORF-containing 5' leaders. Nature Communications 13 (1), 7510 (2022)

Wighard, S.; Athanasouli, M.; Witte, H.; Rödelsperger, C.; Sommer, R.: A New Hope: A hermaphroditic nematode enables analysis of a recent whole genome duplication event. Genome Biology and Evolution 14 (12), evac169 (2022)

Barkhatova, D.; Zhukovsky, D.; Heim, C.; Maiwald, S.; Hartmann, M.; Krasavin, M.: Synthesis of novel glutarimide derivatives via the Ugi multicomponent reaction: affinity towards the E3 ubiquitin ligase substrate receptor Cereblon. Mendeleev Communications 32 (6), pp. 747 - 749 (2022)

Barnett, S.; Youngblut, N.; Buckley, D.: Bacterial community dynamics explain carbon mineralization and assimilation in soils of different land-use history. Environmental Microbiology 24 (11), pp. 5230 - 5247 (2022)

Brinkmeier, J.; Coelho, S.; de Massy, B.; Bourbon, H.-M.: Evolution and diversity of the TopoVI and TopoVI-like subunits with extensive divergence of the TOPOVIBL subunit. Molecular Biology and Evolution 39 (11), msac227 (2022)