Publications of the Institute

Alexander, L.; Lepore, R.; Kryshtafovych, A.; Adamopoulos, A.; Alahuhta, M.; Arvin, A.; Bomble, Y.; Böttcher, B.; Breyton, C.; Chiarini, A. et al.; Chinnam, N.; Chiu, W.; Fidelis, K.; Grinter, R.; Gupta, G.; Hartmann, M.; Hayes, C.; Heidebrecht, T.; Ilari, A.; Joachimiak, A.; Kim, Y.; Linares, R.; Lovering, A.; Lunin, V.; Lupas, A.; Makbul, C.; Michalska, K.; Moult, J.; Mukherjee, P.; Nutt, W.; Oliver, S.; Perrakis, A.; Stols, L.; Tainer, J.; Topf, M.; Tsutakawa, S.; Valdivia-Delgado, M.; Schwede, T.: Target highlights in CASP14: Analysis of models by structure providers. Proteins: Structure, Function, and Genetics 89 (12), pp. 1647 - 1672 (2021)

Coelho, S.; Umen, J.: Switching it up: algal insights into sexual transitions. Plant Reproduction 34 (4), pp. 287 - 296 (2021)

Fink, C.; Beblawy, S.; Enkerlin, A.; Mühling, L.; Angenent, L.; Molitor, B.: A Shuttle-Vector System Allows Heterologous Gene Expression in the Thermophilic Methanogen Methanothermobacter thermautotrophicus ΔH. mBio 12 (6), e0276621 (2021)

Huang, F.; Srisuka, W.; Aupalee, K.; Streit, A.; Fukuda, M.; Pitasawat, B.; Junkum, A.; Saingamsook, J.; Somboon, P.; Takaoka, H. et al.; Saeung, A.: Diversity of nematodes infecting the human-biting black fly species, Simulium nigrogilvum (Diptera: Simuliidae) in central Thailand. Acta Tropica 224, 106140 (2021)

Kröger, P.; Shanmugaratnam, S.; Scheib, U.; Höcker, B.: Fine-tuning spermidine binding modes in the putrescine binding protein PotF. The Journal of Biological Chemistry 297 (6), 101419 (2021)

Kryshtafovych, A.; Moult, J.; Albrecht, R.; Chang, G.; Cao, K.; Fraser, A.; Greenfield, J.; Hartmann, M.; Herzberg, O.; Joosts, I. et al.; Leiman, P.; Linden, S.; Lupas, A.; Nelson, D.; Rees, S.; Shang, X.; Sokolova, M.; Tidow, H.: Computational models in the service of X-ray and cryo-electron microscopy structure determination. Proteins: Structure, Function, and Bioinformatics 89 (12), pp. 1633 - 1646 (2021)

Maiwald, S.; Heim, C.; Hernandez Alvarez, B.; Hartmann, M.: Correction to "Sweet and Blind Spots in E3 Ligase Ligand Space Revealed by a Thermophoresis-Based Assay". ACS Medicinal Chemistry Letters 13 (1), pp. 148 - 149 (2021)

Millán, C.; Keegan, R.; Pereira, J.; Sammito, M.; Simpkin, A.; McCoy, A.; Lupas, A.; Hartmann, M.; Rigden, D.; Read, R.: Assessing the utility of CASP14 models for molecular replacement. Proteins: Structure, Function, and Bioinformatics 89 (12), pp. 1752 - 1769 (2021)

Pereira, J.; Simpkin, A.; Hartmann, M.; Rigden, D.; Keegan, R.; Lupas, A.: High-accuracy protein structure prediction in CASP14. Proteins: Structure, Function, and Bioinformatics 89 (12), pp. 1687 - 1699 (2021)

Selim, K.; Haffner, M.; Burkhardt, M.; Mantovani, O.; Neumann, N.; Albrecht, R.; Seifert, R.; Krüger, L.; Stülke, J.; Hartmann, M. et al.; Hagemann, M.; Forchhammer, K.: Diurnal metabolic control in cyanobacteria requires perception of second messenger signaling molecule c-di-AMP by the carbon control protein SbtB. Science Advances 7 (50), eabk0568 (2021)

Shirsekar, G.; Devos, J.; Latorre, S.; Blaha, A.; Queiroz Dias, M.; González Hernando, A.; Lundberg, D.; Burbano, H.; Fenster, C.; Weigel, D.: Multiple Sources of Introduction of North American Arabidopsis thaliana from across Eurasia. Molecular Biology and Evolution 38 (12), pp. 5328 - 5344 (2021)

Tello, J.; Royo, C.; Baroja, E.; García-Escudero, E.; Martínez-Zapater, J.; Carbonell-Bejerano, P.: Reduced gamete viability associated to somatic genome rearrangements increases fruit set sensitivity to the environment in Tempranillo Blanco grapevine cultivar. Scientia Horticulturae 290, 110497 (2021)

Vigneau, J.; Borg, M.: The epigenetic origin of life history transitions in plants and algae. Plant Reproduction 34 (4), pp. 267 - 285 (2021)

Barnett, S.; Youngblut, N.; Koechli, C.; Buckley, D.: Multisubstrate DNA stable isotope probing reveals guild structure of bacteria that mediate soil carbon cycling. Proceedings of the National Academy of Sciences of the United States of America 118 (47), e2115292118 (2021)

Belyy, A.; Merino, F.; Mechold, U.; Raunser, S.: Mechanism of actin-dependent activation of nucleotidyl cyclase toxins from bacterial human pathogens. Nature Communications 12 (1), 6628 (2021)

Buchholz, P.; van Loo , B.; Eenink, B.; Bornberg-Bauer, E.: Ancestral sequences of a large promiscuous enzyme family correspond to bridges in sequence space in a network representation. Interface: Journal of the Royal Society 18 (184), 20210389 (2021)

Cerruti, E.; Gisbert, C.; Drost, H.-G.; Valentino, D.; Valentino, D.; Portis, E.; Barchi, L.; Prohens, J.; Lanteri, S.; Comino, C. et al.; Catoni, M.: Grafting vigour is associated with DNA de-methylation in eggplant. Horticulture Research 8 (1), 241 (2021)

Di Rienzi, S.; Johnson, E.; Waters, J.; Kennedy, E.; Jacobson, J.; Lawrence, P.; Wang, D.; Worgall, T.; Brenna, J.; Ley, R.: The microbiome affects liver sphingolipids and plasma fatty acids in a murine model of the Western diet based on soybean oil. The Journal of Nutritional Biochemistry 97, 108808 (2021)

Hoshino, M.; Hiruta, S.; Croce, M.; Kamiya, M.; Jomori, T.; Wakimoto, T.; Kogame, K.: Geographical parthenogenesis in the brown alga Scytosiphon lomentaria (Scytosiphonaceae): Sexuals in warm waters and parthenogens in cold waters. Molecular Ecology 30 (22), pp. 5814 - 5830 (2021)

Kreiner, J.; Tranel, P.; Weigel, D.; Stinchcombe, J.; Wright, S.: The genetic architecture and population genomic signatures of glyphosate resistance in Amaranthus tuberculatus. Molecular Ecology 30 (21), pp. 5373 - 5389 (2021)