Publications of DS Lundberg

Saarenpää, S.; Shalev, O.; Ashkenazy, H.; Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatial metatranscriptomics resolves host-bacteria-fungi interactomes. Nature Biotechnology Epub ahead (2023)

Lundberg, D.; de Pedro Jové, R.; Na Ayutthaya, P.; Karasov, T.; Shalev, O.; Poersch, K.; Ding, W.; Bollmann-Giolai, A.; Bezrukov, I.; Weigel, D.: Contrasting patterns of microbial dominance in the Arabidopsis thaliana phyllosphere. Proceedings of the National Academy of Sciences of the United States of America 119 (52), e2211881119 (2022)

Shalev, O.; Karasov, T.; Lundberg, D.; Ashkenazy, H.; Ayutthaya, P.; Weigel, D.: Commensal Pseudomonas strains facilitate protective response against pathogens in the host plant. Nature Ecology & Evolution 6 (4), pp. 383 - 396 (2022)

Shirsekar, G.; Devos, J.; Latorre, S.; Blaha, A.; Queiroz Dias, M.; González Hernando, A.; Lundberg, D.; Burbano, H.; Fenster, C.; Weigel, D.: Multiple Sources of Introduction of North American Arabidopsis thaliana from across Eurasia. Molecular Biology and Evolution 38 (12), pp. 5328 - 5344 (2021)

Lundberg, D.; Ayutthaya, P.; Strauß, A.; Shirsekar, G.; Lo, W.-S.; Lahaye, T.; Weigel, D.: Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition. eLife 10, e66186 (2021)

Cambiagno, D.; Giudicatti, A.; Arce, A.; Gagliardi, D.; Li, L.; Lundberg, D.; Weigel, D.; Manavella, P.: HASTY modulates miRNA biogenesis by linking pri-miRNA transcription and processing. Molecular Plant 14 (3), pp. 426 - 439 (2021)

Regalado, J.; Lundberg, D.; Deusch, O.; Kersten, S.; Karasov, T.; Poersch, K.; Shirsekar, G.; Weigel, D.: Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe-microbe interaction networks in plant leaves. The ISME Journal 14 (8), pp. 2116 - 2130 (2020)

Na Ayutthaya, P.; Lundberg, D.; Weigel, D.; Li, L.: Blue Native Polyacrylamide Gel Electrophoresis (BN-PAGE) for the Analysis of Protein Oligomers in Plants. Current Protocols in Plant Biology 5 (2), e20107 (2020)

Karasov, T.; Almario, J.; Friedemann, C.; Ding, W.; Giolai, M.; Heavens, D.; Kersten, S.; Lundberg, D.; Neumann, M.; Regalado, J. et al.; Neher, R.; Kemen, E.; Weigel, D.: Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales. Cell Host & Microbe 24 (1), pp. 168 - 179 (2018)

Lundberg, D.; Teixeira, P.: Root-exuded coumarin shapes the root microbiome. Proceedings of the National Academy of Sciences of the United States of America 115 (22), pp. 5629 - 5631 (2018)

Lundberg, D.; Lebeis, S.; Paredes, S.; Yourstone, S.; Gehring, J.; Malfatti, S.; Tremblay, J.; Engelbrektson , A.; Kunin, V.; Del Rio, T. et al.; Edgar, R.; Eickhorst, T.; Ley, R.; Hugenholtz, P.; Tringe, S.; Dangl, J.: Defining the core Arabidopsis thaliana root microbiome. Nature 488 (7409), pp. 86 - 90 (2012)

Rowan, B.; Seymour, D.; Chae, E.; Lundberg, D.; Weigel, D.: Methods for Genotyping-by-Sequencing. In: Methods in Molecular Biology, Vol. 1492. Springer, US (2017)

Saarenpää, S.; Shalev, O.; Ashkenazy, H.; de Oliveira-Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatially resolved host-bacteria-fungi interactomes via spatial metatranscriptomics. In Plant & Animal Genome Conference (PAG 30). Plant & Animal Genome Conference (PAG 30), San Diego, CA, USA, January 13, 2023 - January 18, 2023. (2023)

Lundberg, D.; Ayutthaya, P.; Strauß, A.; Shirsekar, G.; Lo, W.-S.; Lahaye, T.; Weigel, D.: Host-associated microbe PCR (hamPCR): accessing new biology through convenient measurement of both microbial load and community composition. In 1st International Student Conference on Biotechnology and Life Science (INSCOBIOL), p. 9. 1st International Student Conference on Biotechnology and Life Science (INSCOBIOL), Surabaya, Indonesia, June 21, 2021. (2021)

Lundberg, D.; de Pedro Jové, R.; Na Ayutthaya, P.; Karasov, T.; Shalev Skriptchak, O.; Poersch, K.; Weigel, D.: Contrasting colonization and host range of Sphingomonas and Pseudomonas in wild Arabidopsis thaliana and neighboring plants. In Molecular Plant-Microbe Interactions, 32 (10S), p. S1.234. XVIII Congress of the International Society for Molecular Plant-Microbe Interactions (IS-MPMI 2019), Glasgow, UK, July 14, 2019 - July 18, 2019. APS Press, St. Paul, MN, USA (2019)

Lebeis, S.; Herrera Paredes, S.; Lundberg, D.; Dangl, J.: Plant determinants of root microbiome composition. In APS Annual Meeting 2015, 41-S. APS Annual Meeting 2015, Pasadena, CA, USA, August 01, 2015 - August 05, 2015. (2015)

Saarenpää, S.; Shalev, O.; Ashkenazy, H.; de Oliveira-Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatial Metatranscriptomics Resolves Host–Bacteria–Fungi Interactomes. Plant and Animal Genome 31 Conference (PAG 2024), San Diego, CA, USA (2024)

Saarenpää, S.; Shalev, O.; Ashkenazy, H.; de Oliveira-Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatially resolved host-bacteria-fungi interactomes via spatial metatranscriptomics. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany (2023)

Lundberg, D.; De Pedro Jové, R.; Na Ayutthaya, P.; Liesecke, F.; Mehmetoglu Boz, E.; Barajas, H.; Weigel, D.: The elephant in the plant: let's talk about a lesser known 'omonas. Congress of the International Society for Molecular Plant-Microbe Interactions (IS-MPMI 2023), Providence, RI, USA (2023)

Shalev Skriptchak, O.; Karasov, T.; Lundberg, D.; Ashkenazy, H.; Weigel, D.: Host Genotype-dependent Interactions among Pathogenic and Commensal Pseudomonas Strains in A. thaliana. XVIII Congress of the International Society for Molecular Plant-Microbe Interactions (IS-MPMI 2019), Glasgow, UK (2019)