Publications of the Institute

Drost, H.-G.; Sanchez, D.: Becoming a Selfish Clan: Recombination Associated to Reverse-Transcription in LTR Retrotransposons. Genome Biology and Evolution 11 (12), pp. 3382 - 3392 (2019)

Hertlein, V.; Flores-Romero, H.; Das, K.; Fischer, S.; Heunemann, M.; Calleja-Felipe, M.; Knafo, S.; Hipp, K.; Harter, K.; Fitzgerald, J. et al.; García-Sáez, A.: MERLIN: a novel BRET-based proximity biosensor for studying mitochondria-ER contact sites. Life science alliance 3 (1), e201900600 (2019)

Lepore, S.; Kryshtafovyc, A.; Alahuthu, M.; Verasztó, H.; Bomble, Y.; Bufton, J.; Bullock, A.; Caba, C.; Cao, H.; Davies, O. et al.; Desfosses, A.; Dunne, M.; Fidelis, K.; Goulding, C.; Gurusaran, M.; Gutsche, I.; Harding, C.; Hartmann, M.; Hayes, C.; Joachimiak, A.; Leiman, P.; Loppnau, P.; Lovering , A.; Lunin, V.; Michalska, K.; Mir-Sanchis, I.; Mitra, A.; Mould, J.; Phillips , G.; Pinkas, D.; Rice, P.; Tong, Y.; Topf, M.; Walton, J.; Schwede, T.: Target highlights in CASP13: Experimental target structures through the eyes of their authors. Proteins: Structure, Function, and Genetics 87 (12), pp. 1037 - 1057 (2019)

Martinez, A.; Onchuru, T.; Ingham, C.; Sandoval-Calderon, M.; Salem, H.; Deckert, J.; Kaltenpoth, M.: Angiosperm to Gymnosperm host-plant switch entails shifts in microbiota of the Welwitschia bug, Probergrothius angolensis (Distant, 1902). Molecular Ecology 28 (23), pp. 5172 - 5187 (2019)

Rödelsperger, C.; Athanasouli, M.; Lenuzzi, M.; Theska, T.; Sun, S.; Wighard, S.; Hu, W.; Sharma, D.; Han, Z.: Crowdsourcing and the feasibility of manual gene annotation: A pilot study in the nematode Pristionchus pacificus. Scientific Reports 9, 18789 (2019)

Rödelsperger, C.; Prabh, N.; Sommer, R.: New gene origin and deep taxon phylogenomics: opportunities and challenges. Trends in Genetics 35 (12), pp. 914 - 922 (2019)

Ruetalo, N.; Anders, S.; Stollmaier, C.; Jäckl, M.; Schütz-Stoffregen, M.; Stefan, N.; Wolf, C.; Wiesner, S.: The WW1 Domain Enhances Autoinhibition in Smurf Ubiquitin Ligases. Journal of Molecular Biology (London) 431 (24), pp. 4834 - 4847 (2019)

Schneider, L.; Kehl, T.; Thedinga, K.; Grammes, N.; Backes, C.; Mohr, C.; Schubert, B.; Lenhof, K.; Gerstner, N.; Hartkopf, A. et al.; Wallwiener, M.; Kohlbacher, O.; Keller, A.; Meese, E.; Graf, N.; Lenhof, H.-P.: ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification. Bioinformatics 35 (24), pp. 5171 - 5181 (2019)

Toledo-Patiño, S.; Chaubey, M.; Coles, M.; Höcker, B.: Reconstructing the Remote Origins of a Fold Singleton from a Flavodoxin-Like Ancestor. Biochemistry 58 (48), pp. 4790 - 4793 (2019)

Tran, H.; Ley, R.; Gewirtz, A.; Chassaing, B.: Flagellin-elicited adaptive immunity suppresses flagellated microbiota and vaccinates against chronic inflammatory diseases. Nature Communications 10, 5650 (2019)

Weidensdorfer, M.; Ishikawa, M.; Hori, K.; Linke, D.; Djahanschiri, B.; Iruegas, R.; Ebersberger, I.; Riedel-Christ, S.; Enders, G.; Leukert, L. et al.; Kraiczy, P.; Rothweiler, F.; Cinatl, J.; Berger, J.; Hipp, K.; Kempf, V.; Göttig, S.: The Acinetobacter trimeric autotransporter adhesin Ata controls key virulence traits of Acinetobacter baumannii. Virulence 10 (1), pp. 68 - 81 (2019)

Zhang, L.; Winkler, S.; Schlottmann, F.; Kohlbacher, O.; Elias, J.; Skotheim, J.; Ewald, J.: Multiple Layers of Phospho-Regulation Coordinate Metabolism and the Cell Cycle in Budding Yeast. Frontiers in Cell and Developmental Biology 7, 338 (2019)

Bichmann, L.; Nelde, A.; Ghosh, M.; Heumos, L.; Mohr, C.; Peltzer, A.; Kuchenbecker, L.; Sachsenberg, T.; Walz, J.; Stevanović, S. et al.; Rammensee, H.-G.; Kohlbacher, O.: MHCquant: Automated and Reproducible Data Analysis for Immunopeptidomics. Journal of Proteome Research 18 (11), pp. 3876 - 3884 (2019)

Cain, N.; Alka, O.; Segelke, T.; von Wuthenau; Kohlbacher, O.; Fischer, M.: Food fingerprinting: Mass spectrometric determination of the cocoa shell content (Theobroma cacao L.) in cocoa products by HPLC-QTOF-MS. Food Chemistry 298, 125013 (2019)

Cal, L.; Suarez-Bregua, P.; Braasch, I.; Irion, U.; Kelsh, R.; Cerdá-Reverter, J.; Rotllant, J.: Loss-of-function mutations in the melanocortin 1 receptor cause disruption of dorso-ventral countershading in teleost fish. Pigment Cell & Melanoma Research 32 (6), pp. 817 - 828 (2019)

Hayward, R.; Marsh, J.; Humphrys, M.; Huston, W.; Myers, G.: Early Transcriptional Landscapes of Chlamydia trachomatis-Infected Epithelial Cells at Single Cell Resolution. Frontiers in Cellular and Infection Microbiology 9, 392 (2019)

Janzon, A.; Goodrich, J.; Koren, O.; TEDDY Study Group; Waters, J.; Ley, R.: Interactions between the Gut Microbiome and Mucosal Immunoglobulins A, M, and G in the Developing Infant Gut. mSystems 4 (6), e00612-19 (2019)

Lauer, J.; Segeletz, S.; Cezanne, A.; Guaitoli, G.; Raimondi, F.; Gentzel, M.; Alva, V.; Habeck, M.; Kalaidzidis, Y.; Ueffing, M. et al.; Lupas, A.; Gloeckner, C.; Zerial, M.: Auto-regulation of Rab5 GEF activity in Rabex5 by allosteric structural changes, catalytic core dynamics and ubiquitin binding. eLife 8, e46302 (2019)

Lederer, S.; Dijkstra, T.; Heskes, T.: Additive Dose Response Models: Defining Synergy. Frontiers in Pharmacology 10, 1384 (2019)

Rowan, B.; Heavens, D.; Feuerborn, T.; Tock, A.; Henderson, I.; Weigel, D.: An Ultra High-Density Arabidopsis thaliana Crossover Map That Refines the Influences of Structural Variation and Epigenetic Features. Genetics 213 (3), pp. 771 - 787 (2019)