Publications of the Institute

Alexander, L.; Durairaj, J.; Kryshtafovych, A.; Abriata, L.; Bayo, Y.; Bhabha, G.; Breyton, C.; Caulton, S.; Chen, J.; Degroux, S. et al.; Ekiert, D.; Erlandsen, B.; Freddolino, P.; Gilzer, D.; Greening, C.; Grimes, J.; Grinter, R.; Gurusaran, M.; Hartmann, M.; Hitchman, C.; Keown, J.; Kropp, A.; Kursula, P.; Lovering, A.; Lemaitre, B.; Lia, A.; Liu, S.; Logotheti, M.; Lu, S.; Markússon, S.; Miller, M.; Minasov, G.; Niemann, H.; Opazo, F.; Phillips jr, G.; Davies, O.; Rommelaere, S.; Rosas-Lemus, M.; Roversi, P.; Satchell, K.; Smith, N.; Wilson, M.; Wu, K.-L.; Xia, X.; Xiao, H.; Zhang, W.; Zhou, Z.; Fidelis, K.; Topf, M.; Moult, J.; Schwede, T.: Protein target highlights in CASP15: Analysis of models by structure providers. Proteins: Structure, Function, and Bioinformatics 91 (12), pp. 1571 - 1599 (2023)

Ayikkara, V.; Raju, D.; Jose, S.; Mirza, Z.: A new species of Epithemis Laidlaw, 1955 (Odonata: Libellulidae) from the Western Ghats, India. Journal of Asia-Pacific Biodiversity 16 (4), pp. 597 - 604 (2023)

Bharat, T.; Tocheva, E.; Alva, V.: The cell envelope architecture of Deinococcus: HPI forms the S-layer and SlpA tethers the outer membrane to peptidoglycan. Proceedings of the National Academy of Sciences of the United States of America 120 (51), e2305338120 (2023)

Chen, J.; Li, L.; Kim, J.; Neuhäuser, B.; Wang, M.; Thelen, M.; Hilleary, R.; Chi, Y.; Wei, L.; Venkataramani, K. et al.; Exposito-Alonso, M.; Liu, C.; Keck, J.; Barragan, A.; Schwab, R.; Lutz, U.; Pei, Z.-M.; He, S.-Y.; Ludewig, U.; Weigel, D.; Zhu, W.: Small proteins modulate ion-channel-like ACD6 to regulate immunity in Arabidopsis thaliana. Molecular Cell 83 (23), pp. 4386 - 4397 (2023)

de la Cuesta Zuluaga, J.; Huus, K.; Youngblut, N.; Escobar, J.; Ley, R.: Obesity is the main driver of altered gut microbiome functions in the metabolically unhealthy. Gut Microbes 15 (2), 2246634 (2023)

Duque-Jaramillo, A.; Ulmer, N.; Alseekh, S.; Bezrukov, I.; Fernie, A.; Skirycz, A.; Karasov, T.; Weigel, D.: The genetic and physiological basis of Arabidopsis thaliana tolerance to Pseudomonas viridiflava. New Phytologist 240 (5), pp. 1961 - 1975 (2023)

Joiner, J.; Steinchen, W.; Mozer, N.; Kronenberger, T.; Bange, G.; Poso, A.; Wagner, S.; Hartmann, M.: HilE represses the activity of the Salmonella virulence regulator HilD via a mechanism distinct from that of intestinal long-chain fatty acids. The Journal of Biological Chemistry 299 (12), 105387 (2023)

Renoz, F.; Arai, H.; Pons, I.: The genus Sodalis as a resource for understanding the multifaceted evolution of bacterial symbiosis in insects. Symbiosis Epub ahead (2023)

Aguirre-Dugua, X.; Barrera-Redondo, J.; Gasca-Pineda, J.; Vázquez-Lobo, A.; López-Camacho, A.; Sánchez-de la Vega, G.; Castellanos-Morales, G.; Scheinvar, E.; Aguirre-Planter, E.; Lira-Saade, R. et al.; Eguiarte, L.: Population Genomics of Domesticated Cucurbita ficifolia Reveals a Recent Bottleneck and Low Gene Flow with Wild Relatives. Plants 12 (23), 3989 (2023)

Fonseca Lopez, F.; Miao, J.; Damjanovic, J.; Bischof, L.; Braun, M.; Ling, Y.; Hartmann, M.; Lin, Y.-S.; Kritzer, J.: Computational Prediction of Cyclic Peptide Structural Ensembles and Application to the Design of Keap1 Binders. Journal of Chemical Information and Modeling 63 (21), pp. 6925 - 6937 (2023)

Gautam, A.; Bhowmik, D.; Basu, S.; Zeng, W.; Lahiri, H.; Huson, D.; Paul, S.: Microbiome Metabolome Integration Platform (MMIP): a web-based platform for microbiome and metabolome data integration and feature identification. Briefings in Bioinformatics 24 (6), bbad325 (2023)

Hoshino, M.: Adaptive significance of asexual pathways in the life cycles of brown algae. Nihon-seitai-gakkai-shi 63 (2), pp. 67 - 78 (2023)

Saarenpää, S.; Shalev, O.; Ashkenazy, H.; Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatial metatranscriptomics resolves host-bacteria-fungi interactomes. Nature Biotechnology Epub ahead (2023)

Sahana, S.; Gautam, A.; Singh, R.; Chandel, S.: A recent update on development, synthesis methods, properties and application of natural products derived carbon dots. Natural Products and Bioprospecting 13 (1), 51 (2023)

Salem, H.; Kaltenpoth, M.: The Nagoya Protocol and its implications for microbiology. Nature Microbiology 8 (12), pp. 2234 - 2237 (2023)

Smug, B.; Szczepaniak, K.; Riocha, E.; Dunin-Horkawicz, S.; Mostowy, R.: Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts. Nature Communications 14 (1), 7460 (2023)

Steinebach, C.; Bricelj, A.; Murgai, A.; Sosič, I.; Bischof, L.; Ng, Y.; Heim, C.; Maiwald, S.; Proj, M.; Voget, R. et al.; Feller, F.; Košmrlj, J.; Sapozhnikova, V.; Schmidt, A.; Zuleeg, M.; Lemnitzer, P.; Mertins, P.; Hansen, F.; Gütschow, M.; Krönke, J.; Hartmann, M.: Leveraging Ligand Affinity and Properties: Discovery of Novel Benzamide-Type Cereblon Binders for the Design of PROTACs. Current Medicinal Chemistry 66 (21), pp. 14513 - 14543 (2023)

Wang, M.-Y.; Chen, J.-B.; Wu, R.; Guo, H.-L.; Chen, Y.; Li, Z.-J.; Wei, L.-Y.; Liu, C.; He, S.-F.; Du, M.-D. et al.; Guo, Y.-L.; Peng, Y.-L.; Jones, J.; Weigel, D.; Huang, J.-H.; Zhu, W.-S.: The plant immune receptor SNC1 monitors helper NLRs targeted by a bacterial effector. Cell Host & Microbe 31 (11), pp. 1792 - 1803 (2023)

Aubel, M.; Eicholt, L.; Bornberg-Bauer, E.; Lange, A.: Wie de novo entstandene Proteine im Labor exprimiert werden können. Biospektrum 29 (6), pp. 629 - 632 (2023)

Borg, M.; Krueger-Hadfield, S.; Destombe, C.; Collén, J.; Lipinska, A.; Coelho, S.: Red macroalgae in the genomic era. New Phytologist 240 (2), pp. 471 - 488 (2023)