Borgwardt, K.: Kernel Methods in Bioinformatics. In: Handbook of Statistical Bioinformatics, pp. 317 - 334 (Eds. Lu, H.-S.; Schölkopf, B.; Zhao, H.). Springer, Berlin, Germany (2011)

Manavella, P.; Rubio-Somoza, I.: Engineering Elements for Gene Silencing: The Artificial MicroRNAs Technology. In: Methods in Molecular Biology, Vol. 732. Springer, US (2011)

Rubio-Somoza, I.; Manavella, P.: Mimicry technology: suppressing small RNA activity in plants. In: Methods in Molecular Biology, Vol. 732. Springer, US (2011)

Achlioptas, P.; Schölkopf, B.; Borgwardt, K.: Two-locus association mapping in subquadratic time. In: 17th ACM SIGKKD Conference on Knowledge Discovery and Data Mining (KDD 2011), pp. 726 - 734 (Eds. Apté, C.; Ghosh, J.; Smyth, P.). 17th ACM SIGKKD Conference on Knowledge Discovery and Data Mining (KDD 2011), San Diego, CA, USA, August 21, 2011 - August 24, 2011. ACM Press, New York, NY, USA (2011)

Janzing, D.; Sgouritsa, E.; Stegle, O.; Peters, J.; Schölkopf, B.: Detecting low-complexity unobserved causes. In: 27th Conference on Uncertainty in Artificial Intelligence (UAI 2011), pp. 383 - 391. 27th Conference on Uncertainty in Artificial Intelligence (UAI 2011), Barcelona, Spain, July 14, 2011 - July 17, 2011. (2011)

Kam-Thong, T.; Pütz, B.; Karbalai, N.; Müller−Myhsok, B.; Borgwardt, K.: Epistasis detection on quantitative phenotypes by exhaustive enumeration using GPUs. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB 2011), Wien, Austria, July 17, 2011 - July 19, 2011. Bioinformatics 27 (13), pp. i214 - i221 (2011)

Lei, L.; Rakitsch, B.; Borgwardt, K.: ccSVM: correcting Support Vector Machines for confounding factors in biological data classification. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB 2011), Wien, Austria, July 17, 2011 - July 19, 2011. Bioinformatics 27 (13), pp. i342 - i348 (2011)

Klotzbücher, K.; Kobayashi, Y.; Shervashidze, N.; Stegle, O.; Müller-Myhsok, B.; Weigel, D.; Borgwardt, K.: Efficient branch-and-bound techniques for two-locus association mapping. In BMC Bioinformatics, 12 (Supplement 11), A3. Seventh International Society for Computational Biology (ISCB) Student Council Symposium 2011, Wien, Austria, July 15, 2011. BioMed Central (2011)

Rowan, B.; Bomblies, K.; Schneeberger, K.; Ossowski, S.; Lanz, C.; Weigel, D.: Natural modifiers of hybrid necrosis in Arabidopsis thaliana. In 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), p. 991. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany, August 20, 2011 - August 25, 2011. (2011)

Smith, L.; Bomblies, K.; Weigel, D.: Complex evolutionary events at a tandem cluster of Arabidopsis thaliana genes resulting in a single-locus genetic incompatibility. In 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), p. 1013. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany, August 20, 2011 - August 25, 2011. (2011)

Behr, J.; Clark, J.; Drewe, P.; Hildebrand, K.; Kover, P.; Lyngsoe, R.; Mott, E.; Osborne, R.; Rätsch, G.; Schultheiss, S. et al.; Sreedharan, V.; Steffen, J.; Stegle, O.; Toomajian, C.; Xiangchao, G.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. In HiTSeq 2011: Conference on High Throughput Sequencing Analysis and Algorithms, p. 22. HiTSeq 2011: Conference on High Throughput Sequencing Analysis and Algorithms, Wien, Austria, July 15, 2011 - July 16, 2011. (2011)

Fenster, C.; Rutter, M.; Roles, A.; Conner, J.; Shaw, R.; Schneeberger, K.; Ossowski, S.; Weigel, D.: Spontaneous mutations and fitness. In Evolution 2011, 044006. Evolution 2011, Norman, OK, USA, June 17, 2011 - June 21, 2012. (2011)

Gan, X.; Behr, J.; Steffen, J.; Hildebrand, K.; Allchin, L.; Goodstadt, L.; Stegle, O.; Drewe, P.; Lyngsoe, R.; Sreedharan, V. et al.; Osborne, E.; Toomajian, C.; Kover, P.; Rätsch, G.; Clark, R.; Mott, R.: Accurate Sequencing of 18 Genomes of Arabidopsis thaliana and Its Use in Imputing the Genome Sequences of Over 600 MAGIC Recombinant Inbred Lines. In 22nd International Conference on Arabidopsis Research (ICAR 2011), 22, p. 78. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA, June 22, 2011 - June 25, 2011. (2011)

Navarro, M.; Acevedo, G.; Cazaux, M.; Mathieu, J.; Schmid, M.; Grbic, M.; Grbic, V.: Genomic Dissection of the Plant/Pest Interaction: Transcriptome Analysis of Arabidopsis Response to Tetranychus urticae (Two Spotted Spider Mite) Feeding. In 22nd International Conference on Arabidopsis Research (ICAR 2011), 63, p. 92. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA, June 22, 2011 - June 25, 2011. (2011)

Borgwardt, K.: Two-locus association mapping in subquadratic time. Seminar Series: European Molecular Biology Laboratory, Heidelberg, Germany (2011)

Warthmann, N.; Chen, H.; Ossowski, S.; Hervé, P.; Hagmann, J.; Zaidem, M.; Choi, I.-R.; Weigel, D.: Finding the Genes and Proving Causality: New Forward and Reverse Genetic Tools and their Application in Rice. Tropentag 2011: International Research on Food Security, Natural Resource Management and Rural Development: Development on the margin, Bonn, Germany (2011)

Günther, T.; Cao, J.; Schneeberger, K.; Ossowski, S.; Weigel, D.; Schmid, K.: Finding the traces of selection in the genome of Arabidopsis thaliana. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany (2011)

Guo, Y.-L.; Hu, T.; Pattyn, P.; Bakker, E.; Cao, J.; Cheng, J.-F.; Clark, R.; Fahlgren, N.; Fawcett, J.; Grimwood, J. et al.; Gundlach, H.; Haberer, G.; Hollister, J.; Ossowski, S.; Ottilar, R.; Salamov, A.; Schneeberger, K.; Spannagl, M.; Wang, X.; Yang, L.; Nasrallah, M.; Bergelson, J.; Carrington, J.; Gaut, B.; Schmutz, J.; Mayer, K.; Van de Peer, Y.; Grigoriev, I.; Nordborg, M.; Weigel, D.: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany (2011)

Kim, S.-T.; Mao, J.-F.; Hagmann, J.; Lanz, C.; Cao, J.; Guo, Y.-L.; Schneeberger, K.; Weigel, D.: Contrasting whole-genome sequence diversity in the selfer Arabidopsis thaliana and the outcrosser A. lyrata. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany (2011)

Koenig, D.; Slotte, T.; Hagmann, J.; Neuffer, B.; Weigel, D.: Population genomic analysis of speciation and radiation in Capsella rubella. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany (2011)