Publications
^{_{Molecular Biology}}

Ankenbrand, M.; Weber, L.; Becker, D.; Förster, F.; Bemm, F.: TBro: visualization and management of de novo transcriptomes. Database: The Journal of Biological Databases and Curation 2016, baw146 (2016)

Künstner, A.; Hoffmann, M.; Fraser, B.; Kottler, V.; Sharma, E.; Weigel, D.; Dreyer, C.: The genome of the trinidadian guppy, Poecilia reticulata, and variation in the Guanapo population. PLoS One 11 (12), e0169087 (2016)

Brodin, J.; Zanini, F.; Thebo, L.; Lanz, C.; Bratt, G.; Neher, R.; Albert, J.: Establishment and stability of the latent HIV-1 DNA reservoir. eLife 5, e18889 (2016)

Dueck, A.; Evers, M.; Henz, S.; Unger, K.; Eichner, M.; Merkl, R.; Berezikov, E.; Engelmann, J.; Weigel, D.; Wenzl, S. et al.; Meister, G.: Gene silencing pathways found in the green alga Volvox carteri reveal insights into evolution and origins of small RNA systems in plants. BMC Genomics 17, 853 (2016)

Seymour, D.; Chae, E.; Grimm, D.; Martín Pizarro, C.; Habring, A.; Vasseur, F.; Rakitsch, B.; Borgwardt, K.; Koenig, D.; Weigel, D.: Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids. Proceedings of the National Academy of Sciences of the United States of America 113 (46), pp. E7317 - E7326 (2016)

Weigel, D.: Why I Love Genetics: Essay on Occasion of Being Awarded the GSA Medal Medal 2016. Genetics 204 (3), pp. 841 - 843 (2016)

Merelo, P.; Ram, H.; Caggiano, M.; Ohno, C.; Ott, F.; Straub, D.; Cho, S.; Yang, S.; Wenkel, S.; Heisler, M.: Regulation of MIR165/166 by class II and class III homeodomain leucine zipper proteins establishes leaf polarity. Proceedings of the National Academy of Sciences of the United States of America 113 (42), pp. 11973 - 11978 (2016)

Iakovidis, M.; Teixeira, P.; Exposito-Alonso, M.; Cowper, M.; Law, T.; Liu, Q.; Vu, M.; Dang, T.; Corwin, J.; Weigel, D. et al.; Dangl, J.; Grant, S.: Effector-Triggered Immune Response in Arabidopsis thaliana Is a Quantitative Trait. Genetics 204 (1), pp. 337 - 353 (2016)

Novikova, P.; Hohmann, N.; Nizhynska, V.; Tsuchimatsu, T.; Ali, J.; Muir, G.; Guggisberg, A.; Paape, T.; Schmid, K.; Fedorenko, O. et al.; Holm, S.; Säll, T.; Schlötterer, C.; Marhold, K.; Widmer, A.; Sese, J.; Shimizu, K.; Weigel, D.; Krämer, U.; Koch, M.; Nordborg, M.: Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism. Nature Genetics 48 (9), pp. 1077 - 1082 (2016)

Li, Z.-W.; Chen, X.; Wu, Q.; Hagmann, J.; Han, T.-S.; Zou, Y.-P.; Ge, S.; Guo, Y.-L.: On the Origin of De Novo Genes in Arabidopsis thaliana Populations. Genome Biology and Evolution 8 (7), pp. 2190 - 2202 (2016)

Liu, C.; Wang, C.; Wang, G.; Becker, C.; Zaidem, M.; Weigel, D.: Genome-wide analysis of chromatin packing in Arabidopsis thaliana at single-gene resolution. Genome Research 26 (8), pp. 1057 - 1068 (2016)

1001 Genomes Consortium; Alonso-Blanco, C.; Andrade, J.; Becker, C.; Bemm, F.; Bergelson, J.; Borgwardt, K.; Cao, J.; Chae, E.; Dezwaan, T. et al.; Ding, W.; Ecker, J.; Exposito-Alonso, M.; Farlow, A.; Fitz, J.; Gan, X.; Grimm, D.; Hancock, A.; Henz, S.; Holm, S.; Horton, M.; Jarsulic, M.; Kerstetter, R.; Korte, A.; Korte, P.; Lanz, C.; Lee, C.-R.; Meng, D.; Michael, T.; Mott, R.; Muliyati, N.; Nägele, T.; Nagler, M.; Nizhynska, V.; Nordborg, M.; Novikova, P.; Picó, F.; Platzer, A.; Rabanal, F.; Rodriguez, A.; Rowan, B.; Salomé, P.; Schmid, K.; Schmitz, R.; Seren, Ü.; Sperone, F.; Sudkamp, M.; Svardal, H.; Tanzer, M.; Todd, D.; Volchenboum, S.; Wang, C.; Wang, G.; Wang, X.; Weckwerth, W.; Weigel, D.; Zhou, X.: 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Cell 166, pp. 481 - 491 (2016)

Dillon, M.; Woods, H.; Wang, G.; Fey, S.; Vasseur, D.; Telemeco, R.; Marshall, K.; Pincebourde, S.: Life in the Frequency Domain: the Biological Impacts of Changes in Climate Variability at Multiple Time Scales. Integrative and Comparative Biology 56 (1), pp. 14 - 30 (2016)

Humble, E.; Martinez-Barrio, A.; Forcada, J.; Trathan, P.; Thorne, M.; Hoffmann, M.; Wolf, J.; Hoffman, J.: A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them. Molecular Ecology Resources 16 (4), pp. 909 - 921 (2016)

Kawakatsu, T.; Huang, S.-S.; Jupe, F.; Sasaki, E.; Schmitz, R.; Urich, M.; Castanon, R.; Nery, J.; Barragan, C.; He, Y. et al.; Chen, H.; Dubin, M.; Lee, C.-R.; Wang, C.; Bemm, F.; Becker, C.; O'Neil, R.; O'Malley, R.; Quarless, D.; 1001 Genomes Consortium; Schork, N.; Weigel, D.; Nordborg, M.; Ecker, J.: Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell 166 (2), pp. 492 - 505 (2016)

Pfeiffer, A.; Janocha, D.; Dong, Y.; Medzihradszky, A.; Schöne, S.; Daum, G.; Suzaki, T.; Forner, J.; Langenecker, T.; Rempel, E. et al.; Schmid, M.; Wirtz, M.; Hell, R.; Lohmann, J.: Integration of light and metabolic signals for stem cell activation at the shoot apical meristem. eLife 5, e17023 (2016)

Weiß, C.; Schünemann, V.; Devos, J.; Shirsekar, G.; Reiter, E.; Gould, B.; Stinchcombe, J.; Krause, J.; Burbano, H.: Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens. Royal Society Open Science 3 (6), 160239 (2016)

Bemm, F.; Weiß, C.; Schultz, J.; Förster, F.: Genome of a tardigrade: Horizontal gene transfer or bacterial contamination? Proceedings of the National Academy of Sciences of the United States of America 113 (22), pp. E3054 - E3056 (2016)

Venturelli, S.; Petersen, S.; Langenecker, T.; Weigel, D.; Lauer, U.; Becker, C.: Allelochemicals of the phenoxazinone class act at physiologically relevant concentrations. Plant Signaling & Behavior 11 (5), e1176818 (2016)

Wibowo, A.; Becker, C.; Marconi, G.; Durr, J.; Price, J.; Hagmann, J.; Papareddy, R.; Putra, H.; Kageyama, J.; Becker, J. et al.; Weigel, D.; Gutierrez-Marcos, J.: Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity. eLife 5, e1354 (2016)