Publications
^{_{Molecular Biology}}

Chen, J.; Li, L.; Kim, J.; Neuhäuser, B.; Wang, M.; Thelen, M.; Hilleary, R.; Chi, Y.; Wei, L.; Venkataramani, K. et al.; Exposito-Alonso, M.; Liu, C.; Keck, J.; Barragan, A.; Schwab, R.; Lutz, U.; Pei, Z.-M.; He, S.-Y.; Ludewig, U.; Weigel, D.; Zhu, W.: Small proteins modulate ion-channel-like ACD6 to regulate immunity in Arabidopsis thaliana. Molecular Cell 83 (23), pp. 4386 - 4397 (2023)

Duque-Jaramillo, A.; Ulmer, N.; Alseekh, S.; Bezrukov, I.; Fernie, A.; Skirycz, A.; Karasov, T.; Weigel, D.: The genetic and physiological basis of Arabidopsis thaliana tolerance to Pseudomonas viridiflava. New Phytologist 240 (5), pp. 1961 - 1975 (2023)

Saarenpää, S.; Shalev, O.; Ashkenazy, H.; Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatial metatranscriptomics resolves host-bacteria-fungi interactomes. Nature Biotechnology Epub ahead (2023)

Wang, M.-Y.; Chen, J.-B.; Wu, R.; Guo, H.-L.; Chen, Y.; Li, Z.-J.; Wei, L.-Y.; Liu, C.; He, S.-F.; Du, M.-D. et al.; Guo, Y.-L.; Peng, Y.-L.; Jones, J.; Weigel, D.; Huang, J.-H.; Zhu, W.-S.: The plant immune receptor SNC1 monitors helper NLRs targeted by a bacterial effector. Cell Host & Microbe 31 (11), pp. 1792 - 1803 (2023)

Vanderschuren, H.; Chatukuta, P.; Weigel, D.; Mehta, D.: A new chance for genome editing in Europe. Nature Biotechnology 41 (10), pp. 1378 - 1380 (2023)

Khaipho-Burch, M.; Cooper, M.; Crossa, J.; de Leon, N.; Holland, J.; Lewis, R.; McCouch, S.; Murray, S.; Rabbi, I.; Ronald, P. et al.; Ross-Ibarra, J.; Weigel, D.; Buckler, E.: Genetic modification can improve crop yields: but stop overselling it. Nature 621 (7979), pp. 470 - 473 (2023)

Yuan, W.; Beitel, F.; Srikant, T.; Bezrukov, I.; Schäfer, S.; Kraft, R.; Weigel, D.: Pervasive Under-Dominance in Gene Expression Underlying Emergent Growth Trajectories in Arabidopsis thaliana Hybrids. Genome Biology: Biology for the Post-Genomic Era 24 (1), 200 (2023)

Monroe, J.; Srikant, T.; Carbonell-Bejerano, P.; Becker, C.; Lensink, M.; Exposito-Alonso, M.; Klein, M.; Hildebrandt, J.; Neumann, M.; Kliebenstein, D. et al.; Weng, M.-L.; Imbert, E.; Ågren, J.; Rutter, M.; Fenster, C.; Weigel, D.: Author Correction: Mutation bias reflects natural selection in Arabidopsis thaliana. Nature 620 (7973), p. E13 (2023)

Grigorjew, A.; Gynter, A.; Dias, F.; Buchfink, B.; Drost, H.-G.; Tomescu, A.: Sensitive inference of alignment-safe intervals from biodiverse protein sequence clusters using EMERALD. Genome Biology: Biology for the Post-Genomic Era 24 (1), 168 (2023)

Monroe, J.; Murray, K.; Xian, W.; Srikant, T.; Carbonell-Bejerano, P.; Becker, C.; Lensink, M.; Exposito Alonso, M.; Klein, M.; Hildebrandt, J. et al.; Neumann, M.; Kliebenstein, D.; Weng, M.-E.; Imbert, L.; Ågren, J.; Rutter, M.; Fenster, C.; Weigel, D.: Reply to: Re-evaluating evidence for adaptive mutation rate variation. Nature 619 (7971), pp. E57 - E60 (2023)

Gu, B.; Parkes, T.; Rabanal, F.; Smith, C.; Lu, F.-H.; McKenzie, N.; Dong, H.; Weigel, D.; Jones, J.; Cevik, V. et al.; Bevan, M.: The integrated LIM-peptidase domain of the CSA1-CHS3/DAR4 paired immune receptor detects changes in DA1 peptidase inhibitors in Arabidopsis. Cell Host & Microbe 31 (6), pp. 949 - 961 (2023)

Kersten, S.; Rabanal, F.; Herrmann, J.; Hess, M.; Kronenberg, Z.; Schmid, K.; Weigel, D.: Deep haplotype analyses of target-site resistance locus ACCase in blackgrass enabled by pool-based amplicon sequencing. Plant Biotechnology Journal 21 (6), uqad008, pp. 1240 - 1253 (2023)

Wlodzimierz, P.; Rabanal, F.; Burns, R.; Naish, M.; Primetis, E.; Scott, A.; Mandáková, T.; Gorringe, N.; Tock, A.; Holland, D. et al.; Fritschi, K.; Habring, A.; Lanz, C.; Patel, C.; Schlegel, T.; Collenberg, M.; Mielke, M.; Nordborg, M.; Roux, F.; Shirsekar, G.; Alonso-Blanco, C.; Lysak, M.; Novikova, P.; Bousios, A.; Weigel, D.; Henderson, I.: Cycles of satellite and transposon evolution in Arabidopsis centromeres. Nature 618 (7965), pp. 557 - 565 (2023)

Bazin, J.; Elvira-Matelot, E.; Blein, T.; Jauvion, V.; Bouteiller, N.; Cao, J.; Crespi, M.; Vaucheret, H.: Synergistic action of the Arabidopsis spliceosome components PRP39a and SmD1b in promoting post-transcriptional transgene silencing. Plant Cell 35 (6), koad091, pp. 1917 - 1935 (2023)

Hirt, H.; Al-Babili, S.; Almeida-Trapp, M.; Antoine, M.; Aranda, M.; Bartels, D.; Bennett, M.; Blilou, I.; Boer, D.; Boulouis, A. et al.; Bowler, C.; Brunel-Muguet, S.; Chardon, F.; Colcombet, J.; Colot, V.; Daszkowska-Golec, A.; Dinneny, J.; Field, B.; Froehlich, K.; Gardener, C.; Gojon, A.; Gomès, E.; Gómez Álvarez, E.; Guttierez, C.; Havaux, M.; Hayes, S.; Heard, E.; Hodges, M.; Alghamdi, A.; Laplaze, L.; Lauersen, K.; Leonhard, N.; Johnson, X.; Jones, J.; Kollist, H.; Kopriva, S.; Krapp, A.; Lopez-Portillo Masson, M.; McCabe, F.; Merendino, L.; Molina, A.; Moreno Ramirez, J.; Müller-Röber, B.; Nicolas, M.; Nir, I.; Olivas Orduna, I.; Pardo-Tomás , J.; Reichheld, J.-P.; Rodriguez Egea, P.; Rouached, H.; Saad, M.; Schlögelhofer, P.; Singh, K.; De Smet, I.; Stanschewski, C.; Tester, M.; Walshe, C.; Weber, A.; Weigel, D.; Wigge, P.; Wrzaczek, M.; Wulff, B.; Young, I.: PlantACT!: How to tackle the climate crisis. Trends in Plant Science 28 (5), pp. 537 - 543 (2023)

Wu, Y.; Li, D.; Hu, Y.; Li, H.; Ramstein, G.; Zhou, S.; Zhang, X.; Bao, Z.; Zhang, Y.; Song, B. et al.; Zhou, Y.; Zhou, Y.; Gagnon, E.; Särkinen, T.; Knapp, S.; Zhang, C.; Städler, T.; Buckler, E.; Huang, S.: Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding. Cell 186 (11), pp. 2313 - 2328 (2023)

Kersten, S.; Chang, J.; Huber, C.; Voichek, Y.; Lanz, C.; Hagmaier, T.; Lang, P.; Lutz, U.; Hirschberg, I.; Lerchl, J. et al.; Porri, A.; Van de Peer, Y.; Schmid, K.; Weigel, D.; Rabanal, F.: Standing genetic variation fuels rapid evolution of herbicide resistance in blackgrass. Proceedings of the National Academy of Sciences of the United States of America 120 (16), e2206808120 (2023)

Vallebueno-Estrada, M.; Hernández-Robles, G.; González-Orozco, E.; López-Valdivia, I.; Rosales Tham, R.; Vásquez Sánchez, V.; Swarts, K.; Dillehay, T.; Vielle-Calzada, J.; Montiel, R.: Domestication and lowland adaptation of coastal preceramic maize from Paredones, Peru. eLife 12, e83149 (2023)

Barrera-Redondo, J.; Lotharukpong, J.; Drost, H.-G.; Coelho, S.: Uncovering gene-family founder events during major evolutionary transitions in animals, plants and fungi using GenEra. Genome Biology 24 (1), 54 (2023)

Ferguson, S.; Jones, A.; Murray, K.; Schwessinger, B.; Borevitz, J.: Interspecies genome divergence is predominantly due to frequent small scale rearrangements in Eucalyptus. Molecular Ecology 32 (6), pp. 1271 - 1287 (2023)