Publications
_{Molecular Biology}

Alañón-Sánchez, N.; Ferradás, Y.; Bezrukov, I.; Weigel, D.; Carbonell Bejerano, P.; Ibáñez, J.: A complex reciprocal translocation underlies reduced bunch compactness in a grapevine somatic variant. BMC Plant Biology Epub ahead (2025)

Bao, Z.; Weigel, D.: Complexity welcome: Pangenome graphs for comprehensive population genomics. Quantitative Plant Biology Epub ahead (2025)

Caetano-Andrade, V.; Clement, C.; Wang, H.; Schöngart, J.; Weigel, D.; Trumbore, S.; Roberts, P.: Brazil nut trees. Current Biology 35 (19), pp. R902 - R904 (2025)

Hussain, N.; Merrit, R.; Engelhorn, J.; Antunez-Sanchez, J.; Wibowo, A.; Latrasse, D.; Wrightsman, T.; Collenberg, M.; Bezrukov, I.; Alotaibi, H. et al.; Carrasco, E.; Benhamed, M.; Weigel, D.; Zabet, N.; Gutierrez-Marcos, J.: iNOME-seq: in vivo simultaneous genome-wide mapping of chromatin accessibility, nucleosome positioning, DNA-binding protein sites, and DNA methylation in Arabidopsis. Genome Biology 26, 361 (2025)

Ning, W.; Ye, Z.; Ye, S.; Xian, W.; Zou, Z.; Liu, Z.; Wang, W.; Chen, B.; Xie, W.; Cheng, S. et al.; Song, B.: The pan-NLRome and diversity of Watkins wheat provide genetic resources for improving disease resistance and adaptation. Plant Communications Epub ahead, 101563 (2025)

Cheng, L.; Bao, Z.; Kong, Q.; Lassois, L.; Stein, N.; Huang, S.; Zhou, Q.: Genome analyses and breeding of polyploid crops. Nature Plants 11 (9), pp. 1714 - 1728 (2025)

Dinatale, E.; Craig, R.; Martinho, C.; Drost, H.; Coelho, S.: Characterization of the transposable element landscape shaping the Ectocarpus genome. Genome Biology 26 (1), 320 (2025)

Igolkina, A.; Vorbrugg, S.; Rabanal, F.; Liu, H.-J.; Ashkenazy, H.; Kornienko, A.; Fitz, J.; Collenberg, M.; Kubica, C.; Mollá Morales, A. et al.; Jaegle, B.; Wrightsman, T.; Voloshin, V.; Bezlepsky, A.; Llaca, V.; Nizhynska, V.; Reichardt, I.; Bezrukov, I.; Lanz, C.; Bemm, F.; Flood, B.; Nemomissa, S.; Hancock, A.; Guo, Y.-L.; Kersey, P.; Weigel, D.; Nordborg, M.: A comparison of 27 Arabidopsis thaliana genomes and the path toward an unbiased characterization of genetic polymorphism. Nature Genetics 57 (9), pp. 2289 - 2301 (2025)

Zhang, Z.; Zhang, P.; Ding, Y.; Wang, Z.; Ma, Z.; Gagnon, E.; Jia, Y.; Cheng, L.; Bao, Z.; Liu, Z. et al.; Wu, Y.; Hu, Y.; Lian, Q.; Lin, W.; Wang, N.; Ye, K.; Wang, H.; Zhang, J.; Zhou, Y.; Liu, L.; Li, S.; Lucas, W.; Särkinen, T.; Knapp, S.; Rieseberg, L.; Liu, J.; Huang, S.: Ancient hybridization underlies tuberization and radiation of the potato lineage. Cell 188 (19), pp. 5249 - 5265 (2025)

Beckel, M.; San Martin, A.; Sánchez, S.; Seymour, D.; José de Leone, M.; Careno, D.; Mora-García, S.; Weigel, D.; Yanovsky, M.; Chernomoretz, A.: Arabidopsis PRMT5 Buffers Pre-mRNA Splicing and Development Against Genetic Variation in Donor Splice Sites. New Phytologist 247 (4), pp. 1727 - 1741 (2025)

Kong, J.; Xu, X.; Carbonell-Bejerano, P.; Wang, H.; Wang, Y.; Wang, Y.; Weigel, D.; Hong, Y.; Liang, Z.; Gallusci, P. et al.; Dai, Z.: Epiallelic variation at the transcription factor MYBA1 promoter contributes to color differences of berry flesh in grapevine. Plant Physiology 198 (4), kiaf340 (2025)

Lundberg, D.; Bergelson, J.; Roux, F.; Weigel, D.; Karasov, T.: Lab to field: Challenges and opportunities for plant biology. Cell Host & Microbe 33 (8), pp. 1212 - 1216 (2025)

Teasdale, L.; Murray, K.; Collenberg, M.; Contreras-Garrido, A.; Schlegel, T.; van Ess, L.; Jüttner, J.; Lanz, C.; Deusch, O.; Fitz, J. et al.; Mencia, R.; van Velthoven, R.; Drost, H.-G.; Weigel, D.; Shirsekar, G.: Pangenomic context reveals the extent of intraspecific plant NLR evolution. Cell Host & Microbe 33 (8), pp. 1291 - 1305 (2025)

Xian, W.; Carbonell-Bejerano, P.; Rabanal, F.; Bezrukov, I.; Reymond, P.; Weigel, D.: Minimizing detection bias of somatic mutations in a highly heterozygous oak genome. G3: Genes, Genomes, Genetics 15 (8), jkaf143 (2025)

Lundberg, D.; Kersten, S.; Mehmetoğlu Boz, E.; Ayutthaya, P.; Zhu, W.; Poersch, K.; Yuan, W.; Swartz, S.; Müller, D.; Bezrukov, I. et al.; HARVEST TEAM; Weigel, D.: A major trade-off between growth and defense in Arabidopsis thaliana can vanish in field conditions. PLOS Biology 23 (7), e3003237 (2025)

Movilli, A.; Sushko, S.; Rabanal, F.; Weigel, D.: Long-read detection of transposable element mobilization in the soma of hypomethylated Arabidopsis thaliana individuals. Genome Biology 26 (1), 231 (2025)

Nemhauser, J.; Weigel, D.: Joanne Chory (1955–2024): Plant geneticist extraordinaire. Proceedings of the National Academy of Sciences of the United States of America 122 (30), e2515437122 (2025)

Lutz, U.; Bezrukov, I.; Schwab, R.; Yuan, W.; Kollmar, M.; Weigel, D.: Species-wide gene editing of a flowering regulator reveals hidden phenotypic variation. PLOS Biology 23 (6), e3003226 (2025)

Cheng, L.; Wang, N.; Bao, Z.; Zhou, Q.; Guarracino, A.; Yang, Y.; Wang, P.; Zhang, Z.; Tang, D.; Zhang, P. et al.; Wu, Y.; Zhou, Y.; Zheng, Y.; Hu, Y.; Liang, Q.; Ma, Z.; Lassois, L.; Zhang, C.; Lucas, W.; Garrison, E.; Stein, N.; Städler, T.; Zhou, Y.; Huang, S.: Leveraging a phased pangenome for haplotype design of hybrid potato. Nature 640 (8058), pp. 408 - 417 (2025)

Du, K.; Deusch, O.; Bezrukov, I.; Lanz, C.; Guiguen, Y.; Hoffmann, M.; Habring, A.; Weigel, D.; Schartl, M.; Dreyer, C.: Identification of the male-specific region on the guppy Y Chromosome from a haplotype-resolved assembly. Genome Research 35 (3), pp. 489 - 498 (2025)