Publications
_{Molecular Biology}

Gerstein, M.; Lu, Z.; Van Nostrand, E.; Cheng, C.; Arshinoff, B.; Liu, T.; Yip, K.; Robilotto, R.; Rechtsteiner, A.; Ikegami, K. et al.; Alves, P.; Chateigner, A.; Perry, M.; Morris, M.; Auerbach, R.; Feng, X.; Leng, J.; Vielle, A.; Niu, W.; Rhrissorrakrai, K.; Agarwal, A.; Alexander, R.; Barber, G.; Brdlik, C.; Brennan, J.; Brouillet, J.; Carr, A.; Cheung, M.-S.; Clawson, H.; Contrino, S.; Dannenberg, L.; Dernburg, A.; Desai, A.; Dick, L.; Dosé, A.; Du, J.; Egelhofer, T.; Ercan, S.; Euskirchen, G.; Ewing, B.; Feingold, E.; Gassmann, R.; Good, P.; Green, P.; Gullier, F.; Gutwein, M.; Guyer, M.; Habegger, L.; Han, T.; Henikoff, J.; Henz, S.; Hinrichs, A.; Holster, H.; Hyman, A.; Iniguez, A. L.; Janette, J.; Jensen, M.; Kato, M.; Kent, W. J.; Kephart, E.; Khivansara, V.; Khurana, E.; Kim, J. K.; Kolasinska-Zwierz, P.; Lai, E. C.; Latorre, I.; Leahey, A.; Lewis, S. E.; Lloyd, P.; Lochovsky, L.; Lowdon, R. F.; Lubling, Y.; Lyne, R.; MacCoss, M.; Mackowiak, S. D.; Mangone, M.; McKay, S.; Mecenas, D.; Merrihew, G.; Miller, D. M.; Muroyama, A.; Murray, J. I.; Ooi, S.-L.; Pham, H.; Phippen, T.; Preston, E. A.; Rajewski, N.; Rätsch, G.; Rosenbaum, H.; Rozowksy, J.; Rutherford, K.; Ruzanov, P.; Sarov, M.; Sasidharan, R.; Sboner, A.; Scheid, P.; Segal, E.; Shin, H.; Shou, C.; Slack, F. J.; Slightham, C.; Smith, R.; Spencer, W. C.; Stinson, E. O.; Taing, S.; Takasaki, T.; Vafeados, D.; Voronina, K.; Wang, G.; Washington, N. L.; Whittle, C. M.; Wu, B.; Yang, K.-K.; Zeller, G.; Zha, Z.; Zhong, M.; Zhou, X.; Ahringer, J.; Strome, S.; Gunsalus, K. C.; Micklem, G.; Liu, X. S.; Reinke, V.; Kim, S. K.; Hillier, L. W.; Henikoff, S.; Piano, F.; Snyder, M.; Stein, L.; Lieb, J. D.; Waterston, R. H.: Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science 330 (6012), pp. 1775 - 1787 (2010)

Wahl, V.; Brand, L.; Guo, Y.-L.; Schmid, M.: The FANTASTIC FOUR proteins influence shoot meristem size in Arabidopsis thaliana. BMC Plant Biology 10, 285 (2010)

Salomé, P.; Weigel, D.; McClung, R.: The role of the Arabidopsis morning loop components CCA1, LHY, PRR7, and PRR9 in temperature compensation. Plant Cell 22 (11), pp. 3650 - 3661 (2010)

Wollmann, H.; Mica, E.; Todesco, M.; Long, J.; Weigel, D.: On reconciling the interactions between APETALA2, miR172 and AGAMOUS with the ABC model of flower development. Development 137 (21), pp. 3633 - 3642 (2010)

Camps-Valls, G.; Shervashidze, N.; Borgwardt, K.: Spatio-Spectral Remote Sensing Image Classification With Graph Kernels. IEEE Geoscience and Remote Sensing Letters 7 (4), pp. 741 - 745 (2010)

Heard, E.; Tishkoff, S.; Todd, J.; Vidal, M.; Wagner, G.; Wang, J.; Weigel, D.; Young, R.: Ten years of genetics and genomics: what have we achieved and where are we heading? Nature Reviews Genetics 11 (10), pp. 723 - 733 (2010)

Laubinger, S.; Zeller, G.; Henz, S.; Buechel, S.; Sachsenberg, T.; Wang, J.-W.; Rätsch, G.; Weigel, D.: Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome. Proceedings of the National Academy of Sciences of the United States of America 107 (41), pp. 17466 - 17573 (2010)

Thoma, M.; Cheng, H.; Gretton, A.; Han, J.; Kriegel, H.-P.; Smola, A.; Song, L.; Yu, P.; Yan, X.; Borgwardt, K.: Discriminative frequent subgraph mining with optimality guarantees. Statistical Analysis and Data Mining 3 (5), pp. 302 - 318 (2010)

Roslowski, S.; Jali, S.; Balasubramaniam, S.; Weigel, D.; Grbic, V.: Natural diversity in flowering responses of Arabidopsis thaliana caused by variation in a tandem gene array. Genetics 186 (1), pp. 263 - 276 (2010)

Boy, A.; Zhai, Z.; Habring-Müller, A.; Kussler-Schneider, Y.; Kaspar, P.; Lohmann, I.: Vectors for efficient and high-throughput construction of fluorescent drosophila reporters using the PhiC31 site-specific integration system. Genesis 48 (7), pp. 452 - 456 (2010)

Gonzalez, N.; de Bodt, S.; Sulpice, R.; Jikumaru, Y.; Chae, E.; Dhondt, S.; van Daele, T.; de Milde, L.; Weigel, D.; Kamiya, Y. et al.; Stitt, M.; Beemster, G.; Inze, D.: Increased Leaf Size: Different Means to an End. Plant Physiology 153 (3), pp. 1261 - 1279 (2010)

Todesco, M.; Rubio-Somoza, I.; Paz-Ares, J.; Weigel, D.: A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana. PLoS Genetics 6 (7), e1001031 (2010)

Weigel, D.; Glazebrook, J.: Transmission electron microscopy (TEM) freeze substitution of plant tissues. Cold Spring Harbor protocols 2010 (7), pdb.prot4959 (2010)

Yant, L.; Mathieu, J.; Dinh, T.; Ott, F.; Lanz, C.; Wollmann, H.; Chen, X.; Schmid, M.: Orchestration of the floral transition and floral development in Arabidopsis by the bifunctional transcription factor APETALA2. Plant Cell 22 (7), pp. 2156 - 2170 (2010)

Atwell, S.; Huang, Y.; Vilhjalmsson, B.; Willems, G.; Horton, M.; Li, Y.; Meng, D.; Platt, A.; Tarone, A.; Hu, T. et al.; Jiang, R.; Muliyati, N.; Zhang, X.; Amer, M.; Baxter, I.; Brachi, B.; Chory, J.; Dean, C.; Debieu, M.; de Meaux, J.; Ecker, J.; Faure, N.; Kniskern, J.; Jones, J.; Michael, T.; Nemri, A.; Roux, F.; Salt, D.; Tang, C.; Todesco, M.; Traw, M.; Weigel, D.; Marjoram, P.; Borevitz, J.; Bergelson, J.; Nordborg, M.: Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465 (7298), pp. 627 - 631 (2010)

Bomblies, K.; Weigel, D.: Arabidopsis and relatives as models for the study of genetic and genomic incompatibilities. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 365 (1547), pp. 1815 - 1823 (2010)

Koo, S.; Bracko, O.; Park, M.; Schwab, R.; Chun, H.; Park, K.; Seo, J.; Grbic, V.; Balasubramanian, S.; Schmid, M. et al.; Godard, F.; Yun, D.-J.; Lee, S.; Cho, M.; Weigel, D.; Kim, M.: Control of lateral organ development and flowering time by the Arabidopsis thaliana MADS-box Gene AGAMOUS-LIKE6. The Plant Journal 62 (5), pp. 807 - 816 (2010)

Laitinen, R.; Schneeberger, K.; Jelly, N.; Ossowski, S.; Weigel, D.: Identification of a spontaneous frame shift mutation in a nonreference Arabidopsis accession using whole genome sequencing. Plant Physiology 153 (2), pp. 652 - 654 (2010)

Todesco, M.; Balasubramanian, S.; Hu, T.; Traw, M.; Horton, M.; Epple, P.; Kuhns, C.; Balasubramanian, S.; Schwartz, C.; Lanz, C. et al.; Laitinen, R.; Huang, Y.; Chory, J.; Lipka, V.; Borevitz, J.; Dangl, J.; Bergelson, J.; Nordborg, M.; Weigel, D.: Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature 465 (7298), pp. 632 - 636 (2010)

Zhao, Z.; Andersen, S.; Ljung, K.; Dolezal, K.; Miotk, A.; Schultheiss, S.; Lohmann, J.: Hormonal control of the shoot stem-cell niche. Nature 465 (7301), pp. 1089 - 1092 (2010)