Publikationen
_{Molekularbiologie}

Beckel, M.; San Martin, A.; Sánchez, S.; Seymour, D.; José de Leone, M.; Careno, D.; Mora-García, S.; Weigel, D.; Yanovsky, M.; Chernomoretz, A.: Arabidopsis PRMT5 Buffers Pre-mRNA Splicing and Development Against Genetic Variation in Donor Splice Sites. New Phytologist Epub ahead (2025)

Lutz, U.; Bezrukov, I.; Schwab, R.; Yuan, W.; Kollmar, M.; Weigel, D.: Species-wide gene editing of a flowering regulator reveals hidden phenotypic variation. PLOS Biology 23 (6), e3003226 (2025)

Xian, W.; Carbonell-Bejerano, P.; Rabanal, F.; Bezrukov, I.; Reymond, P.; Weigel, D.: Minimizing detection bias of somatic mutations in a highly heterozygous oak genome. G3: Genes, Genomes, Genetics Epub ahead, jkaf143 (2025)

Cheng, L.; Wang, N.; Bao, Z.; Zhou, Q.; Guarracino, A.; Yang, Y.; Wang, P.; Zhang, Z.; Tang, D.; Zhang, P. et al.; Wu, Y.; Zhou, Y.; Zheng, Y.; Hu, Y.; Liang, Q.; Ma, Z.; Lassois, L.; Zhang, C.; Lucas, W.; Garrison, E.; Stein, N.; Städler, T.; Zhou, Y.; Huang, S.: Leveraging a phased pangenome for haplotype design of hybrid potato. Nature 640 (8058), S. 408 - 417 (2025)

Du, K.; Deusch, O.; Bezrukov, I.; Lanz, C.; Guiguen, Y.; Hoffmann, M.; Habring, A.; Weigel, D.; Schartl, M.; Dreyer, C.: Identification of the male-specific region on the guppy Y Chromosome from a haplotype-resolved assembly. Genome Research 35 (3), S. 489 - 498 (2025)

Morales-Díaz, N.; Sushko, S.; Campos-Dominguez, L.; Kopalli, V.; Golicz, A.; Castanera, J.; Casacuberta, M.: Tandem LTR-retrotransposon structures are common and highly polymorphic in plant genomes. Mobile DNA 16 (1), 10 (2025)

Wang, H.; Caetano-Andrade, V.; Boivin, N.; da Silva Costa, F.; Weigel, D.; Roberts, P.: Long-term human influence on the demography and genetic diversity of the hyperdominant Bertholletia excelsa in the Amazon Basin. Current Biology 35 (3), S. 629 - 639 (2025)

Chen, H.; Xiong, F.; Wangler, A.-M.; Bischoff, T.; Wang, K.; Miao, Y.; Slane, D.; Schwab, R.; Laux, T.; Bayer, M.: Phosphorylation-Dependent Activation of the bHLH Transcription Factor ICE1/SCRM Promotes Polarization of the Arabidopsis Zygote. New Phytologist 245 (3), S. 1029 - 1039 (2025)

Mencia, R.; Arce, A.; Houriet, C.; Xian, W.; Contreras, A.; Shirsekar, G.; Weigel, D.; Manavella, P.: Transposon-triggered epigenetic chromatin dynamics modulate EFR-related pathogen response. Nature Structural & Molecular Biology 32 (1), S. 199 - 211 (2025)

Xian, W.; Bezrukov, I.; Bao, Z.; Vorbrugg, S.; Gautam, A.; Weigel, D.: TIPPo: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with High-Fidelity Data. Molecular Biology and Evolution 42 (1), msae247 (2025)

Vasseur, F.; Baldrich, P.; Jiménez-Góngora, T.; Villar-Martin, L.; Weigel, D.; Rubio-Somoza, I.: miR472 deficiency enhances Arabidopsis thaliana defense without reducing seed production. Molecular Plant-Microbe Interactions 37 (12), S. 819 - 827 (2024)

Vorbrugg, S.; Bezrukov, I.; Bao, Z.; Weigel, D.: Gretl: Variation GRaph Evaluation TooLkit. Bioinformatics 41 (1), btae755 (2024)

Garrison, E.; Guarracino, A.; Heumos, S.; Villani, F.; Bao, Z.; Tattini, T.; Hagmann, J.; Vorbrugg, S.; Marco-Sola, S.; Kubica, C. et al.; Ashbrook, G.; Thorell, K.; Rusholme-Pilcher, R.; Liti, G.; Rudbeck, E.; Golicz, A.; Nahnsen, S.; Yang, Z.; Mwaniki, M.; Nobrega, F.; Wu, Y.; Chen, H.; de Ligt, J.; Sudmant, P.; Huang, S.; Weigel, D.; Soranzo, N.; Colonna, V.; Williams, R.; Prins, P.: Building pangenome graphs. Nature Methods 21 (11), S. 2008 - 2012 (2024)

Koren, S.; Bao, Z.; Guarracino, A.; Ou, S.; Goodwin, S.; Jenike, K.; Lucas, J.; McNulty, B.; Park, J.; Rautiainen, M. et al.; Rhie, A.; Roelofs, D.; Schneiders, H.; Vrijenhoek, I.; Nijbroek, K.; Nordesjo, O.; Nurk, S.; Vella, M.; Lawrence, K.; Ware, D.; Schatz, M.; Garrison, E.; Huang, S.; McCombie, W.; Miga, K.; Wittenberg, A.; Phillippy, A.: Gapless assembly of complete human and plant chromosomes using only nanopore sequencing. Genome Research 34 (11), S. 1919 - 1930 (2024)

Lotharukpong, J.; Zheng, M.; Luthringer, R.; Liesner, D.; Drost, H.-G.; Coelho, S.: A Transcriptomic Hourglass In Brown Algae. Nature 635 (8037), S. 129 - 135 (2024)

Karasov, T.; Neumann, M.; Leventhal, L.; Symeonidi, E.; Shirsekar, G.; Hawks, A.; Monroe, G.; Pathodopsis Team; Exposito-Alonso, M.; Borgelsen, J. et al.; Weigel, D.; Schwab, R.: Continental-scale associations of Arabidopsis thaliana phyllosphere members with host genotype and drought. Nature Microbiology 9 (10), S. 2748 - 2758 (2024)

Liu, T.; Liu, H.; Xian, W.; Liu, Z.; Yuan, Y.; Fan, J.; Xiang, S.; Yang, X.; Liu, Y.; Liu, S. et al.; Zhang, M.; Shen, Y.; Jiao, Y.; Cheng, S.; Doyle, J.; Xie, F.; Li, J.; Tian, Z.: Duplication and sub-functionalization of flavonoid biosynthesis genes plays important role in Leguminosae root nodule symbiosis evolution. Journal of Integrative Plant Biology 66 (10), S. 2191 - 2207 (2024)

Sunil, S.; Beeh, S.; Stöbbe, E.; Fischer, K.; Wilhelm, F.; Meral, A.; Paris, C.; Teasdale, L.; Jiang, Z.; Zhang, L. et al.; Urban, M.; Aguilar Parras, E.; Nürnberger, T.; Weigel, D.; Lozano-Duran, R.; El Kasmi, F.: Activation of an atypical plant NLR with an N-terminal deletion initiates cell death at the vacuole. EMBO Reports 25 (10), S. 4358 - 4386 (2024)

Voichek, Y.; Hristova, G.; Mollá-Morales, A.; Weigel, D.; Nordborg, M.: Widespread position-dependent transcriptional regulatory sequences in plants. Nature Genetics 56 (10), S. 2238 - 2246 (2024)

Wegner, H.; Roitman, S.; Kupczok, A.; Braun, V.; Woodhouse, J.; Grossart, H.-P.; Zehner, S.; Béjà, O.; Frankenberg-Dinkel, N.: Identification of Shemin pathway genes for tetrapyrrole biosynthesis in bacteriophage sequences from aquatic environments. Nature Communications 15 (1), 8713 (2024)