Publications
^{_{Molecular Biology}}

Drost, H.-G.: Unveiling the expanding protein universe of life. Nature Reviews Genetics 25 (5), p. 306 (2024)

Ferguson, S.; Jones, A.; Murray, K.; Andrew, S.; Schwessinger, B.; Borevitz, J.: Plant genome evolution in the genus Eucalyptus driven by structural rearrangements that promote sequence divergence. Genome Research Epub ahead (2024)

Barragan, A.; Collenberg, M.; Schwab, R.; Kersten, S.; Kerstens, M.; Požárová, D.; Bezrukov, I.; Bemm, F.; Kolár, F.; Weigel, D.: Deleterious Phenotypes in Wild Arabidopsis arenosa Populations Are Common and Linked to Runs of Homozygosity. G3: Genes, Genomes, Genetics 14 (3), jkad290 (2024)

Drost, H.-G.: How ancient genes form animal body plans. Nature Reviews Genetics Epub ahead (2024)

Murray, K.; Borevitz, J.; Weigel, D.; Warthmann, N.: Acanthophis: a comprehensive plant hologenomics pipeline. The Journal of Open Source Software (JOSS) 9 (95), 6062 (2024)

Tamulaitiene, G.; Sabonis, D.; Sasnauskas, G.; Ruksenaite, A.; Silanskas, A.; Avraham, C.; Ofir, G.; Sorek, R.; Zaremba, M.; Siksnys, V.: Activation of Thoeris antiviral system via SIR2 effector filament assembly. Nature 627 (8003), pp. 431 - 436 (2024)

Contreras-Garrido, A.; Galanti, D.; Movilli, A.; Becker, C.; Bossdorf, O.; Drost, H.-G.; Weigel, D.: Transposon dynamics in the emerging oilseed crop Thlaspi arvense. PLOS Genetics 20 (1), e1011141 (2024)

Fernandes, J.; Naish, M.; Lian, Q.; Burns, R.; Tock, A.; Rabanal, F.; Wlodzimierz, P.; Habring, A.; Nicholas, R.; Weigel, D. et al.; Mercier, R.; Henderson, I.: Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis. Genome Biology 25 (1), 30 (2024)

Ou, S.; Bousios, A.; Bao, Z.: Comprehensive Annotation of Transposable Elements in the T2T TAIR12 Arabidopsis Genome. In Plant and Animal Genome 31 Conference (PAG 2024). Plant and Animal Genome 31 Conference (PAG 2024), San Diego, CA, USA, January 13, 2018 - January 17, 2018. (2024)

Ou, S.; Liao, H.; Lu, T.; Bao, Z.; Heringer, P.; Dainat, J.; Deng, C.; Rashid, U.: EDTA2: De Novo Transposon Annotation in Diverse TE Landscapes. In Plant and Animal Genome 31 Conference (PAG 2024). Plant and Animal Genome 31 Conference (PAG 2024), San Diego, CA, USA, January 13, 2018 - January 17, 2018. (2024)

Ofir, G.: F-box proteins:- the second most diverse family of Arabidopsis genes. EMBO EMBL Symposium: Diversity of plants: from genomes to metabolism , Heidelberg, Germany (2024)

Saarenpää, S.; Shalev, O.; Ashkenazy, H.; de Oliveira-Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatial Metatranscriptomics Resolves Host–Bacteria–Fungi Interactomes. Plant and Animal Genome 31 Conference (PAG 2024), San Diego, CA, USA (2024)

Tao, Y.: Atlas of Telomeric Repeats in Arabidopsis thaliana. Plant and Animal Genome 31 Conference (PAG 2024), San Diego, CA, USA (2024)

Contreras, A.: The epigenomic impact of transposable elements in natural populations. Dissertation, Eberhard-Karls-Universität, Tübingen, Germany (2024)

Lotharukpong, J.; Zheng, M.; Luthringer, R.; Haas, F.; Drost, H.-G.; Coelho, S.: A Transcriptomic Hourglass In Brown Algae. (submitted)

Koren, S.; Bao, Z.; Guarracino, A.; Ou, S.; Goodwin, S.; Jenike, K.; Lucas, J.; McNulty, B.; Park, J.; Rautiainen, M. et al.; Rhie, A.; Roelofs, D.; Schneiders, H.; Vrijenhoek, I.; Nijbroek, K.; Ware, D.; Schatz, M.; Garrison, E.; Huang, S.; McCombie, W.; Miga, K.; Wittenberg, A.; Phillippy, A.: Gapless assembly of complete human and plant chromosomes using only nanopore sequencing. (submitted)

Vorbrugg, S.; Bezrukov, I.; Bao, Z.; Weigel, D.: Gretl: Variation GRaph Evaluation TooLkit. (submitted)

Calderón, L.; Carbonell-Bejerano, P.; Muñoz, C.; Bree, L.; Sola, C.; Bergamin, D.; Tulle, W.; Gomez-Talquenca, S.; Lanz, C.; Royo, C. et al.; Ibáñez, J.; Martinez-Zapater, J.; Weigel, D.; Lijavetzky, D.: Diploid genome assembly of the Malbec grapevine cultivar enables haplotype-aware analysis of transcriptomic differences underlying clonal phenotypic variation. (submitted)

Xian, W.; Weigel, D.: TIPP_plastid: A User-Friendly Tool for De Novo Assembly of Plastid Genomes. (submitted)