Publications
_{Molecular Biology}

Cheng, L.; Wang, N.; Bao, Z.; Zhou, Q.; Guarracino, A.; Yang, Y.; Wang, P.; Zhang, Z.; Tang, D.; Zhang, P. et al.; Wu, Y.; Zhou, Y.; Zheng, Y.; Hu, Y.; Liang, Q.; Ma, Z.; Lassois, L.; Zhang, C.; Lucas, W.; Garrison, E.; Stein, N.; Städler, T.; Zhou, Y.; Huang, S.: Leveraging a phased pangenome for haplotype design of hybrid potato. Nature 640 (8058), pp. 408 - 417 (2025)

Du, K.; Deusch, O.; Bezrukov, I.; Lanz, C.; Guiguen, Y.; Hoffmann, M.; Habring, A.; Weigel, D.; Schartl, M.; Dreyer, C.: Identification of the male-specific region on the guppy Y Chromosome from a haplotype-resolved assembly. Genome Research 35 (3), pp. 489 - 498 (2025)

Morales-Díaz, N.; Sushko, S.; Campos-Dominguez, L.; Kopalli, V.; Golicz, A.; Castanera, J.; Casacuberta, M.: Tandem LTR-retrotransposon structures are common and highly polymorphic in plant genomes. Mobile DNA 16 (1), 10 (2025)

Wang, H.; Caetano-Andrade, V.; Boivin, N.; da Silva Costa, F.; Weigel, D.; Roberts, P.: Long-term human influence on the demography and genetic diversity of the hyperdominant Bertholletia excelsa in the Amazon Basin. Current Biology 35 (3), pp. 629 - 639 (2025)

Chen, H.; Xiong, F.; Wangler, A.-M.; Bischoff, T.; Wang, K.; Miao, Y.; Slane, D.; Schwab, R.; Laux, T.; Bayer, M.: Phosphorylation-Dependent Activation of the bHLH Transcription Factor ICE1/SCRM Promotes Polarization of the Arabidopsis Zygote. New Phytologist 245 (3), pp. 1029 - 1039 (2025)

Mencia, R.; Arce, A.; Houriet, C.; Xian, W.; Contreras, A.; Shirsekar, G.; Weigel, D.; Manavella, P.: Transposon-triggered epigenetic chromatin dynamics modulate EFR-related pathogen response. Nature Structural & Molecular Biology 32 (1), pp. 199 - 211 (2025)

Xian, W.; Bezrukov, I.; Bao, Z.; Vorbrugg, S.; Gautam, A.; Weigel, D.: TIPPo: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with High-Fidelity Data. Molecular Biology and Evolution 42 (1), msae247 (2025)

Magris, G.; Zelasco, S.; Salimonti, A.; Forgione, I.; Sirangelo, T.; Carbonell Bejerano, P.; Weigel, D.; Bagnaresi, P.; Di Gaspero, G.; Scalabrin, S. et al.; Scaglione, D.; Usai, G.; Mascagni, F.; Natali, L.; Cavallini, A.; Marchese, A.; Marra, F.; Mulas, M.; Medda, S.; Muleo, R.; Baldoni, L.; Perri, E.; Cattivelli, L.; Carbone, F.; Morgante, M.: Analysis Based on New Olive Reference Genome Has Revealed That Only a Few Generations of Sexual Reproduction Separate Cultivated Olive from Its Wild Ancestor. In Plant and Animal Genome 31 Conference (PAG 2024). Plant and Animal Genome 32 Conference (PAG 2025), San Diego, CA, USA, January 10, 2025 - January 15, 2025. (2025)

Lucke, M.: Copy, change, repeat: Global diversity of A.thaliana plant immune receptor RPP1. BioConnect Seminar: Max Planck Institute for Biology, Tübingen, Germany (2025)

Weigel, D.: Imperfect Plants In an Imperfect World. ETH Zürich: Institute of Microbiology, Zürich, Switzerland (2025)

Weigel, D.: "Imperfect plants in an imperfect world. PLANT Workshop: Institut Pascal, Université Paris-Saclay, Paris, France (2025)

Weigel, D.: Imperfect Plants In an Imperfect World. Université Paris: Section Ecologie et Biologie de l’Evolution, Paris, France (2025)

Weigel, D.: Imperfect Plants In an Imperfect World. Max Planck Institute of Biochemistry: MPIB Seminar , Martinsried, Germany (2025)

Ofir, G.: Innovation and Conservation in Plant Immuno-Genomics. BioConnect Seminar: Max Planck Institute for Biology, Tübingen, Germany (2025)

Movilli, A.; Sushko, S.; Rabanal, F.; Weigel, D.: Long-read detection of transposable element mobilization in the soma of hypomethylated Arabidopsis thaliana individuals. (submitted)

Xian, W.; Carbonell-Bejerano, P.; Rabanal, F.; Bezrukov, I.; Reymond, P.; Weigel, D.: Minimizing detection bias of somatic mutations in a highly heterozygous oak genome. (submitted)

Gorringe, N.; Topp, S.; Burns, R.; Yamaguchi, S.; Rabanal, F.; Fernandes, J.; Weigel, D.; Kakutani, T.; Naish, M.; Henderson, I.: Natural variation modifies centromere proximal meiotic crossover frequency and segregation distortion in Arabidopsis thaliana. (submitted)

Xian, W.; Bao, Z.; Vorbrugg, S.; Tao, Y.; Movilli, A.; Bezrukov, I.; Weigel, D.: The structure of mitochondrial genomes is associated with geography in Arabidopsis thaliana. (submitted)