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Karaletsos, T.; Stegle, O.; Dreyer, C.; Winn, J.; Borgwardt, K.: ShapePheno: Unsupervised extraction of shape phenotypes from biological image collections. Bioinformatics 28 (7), pp. 1001 - 1008 (2012)

Zhai, Z.; Ha, N.; Papagiannouli, F.; Hamacher-Brady, A.; Brady, N.; Sorge, S.; Bezdan, D.; Lohmann, I.: Antagonistic regulation of apoptosis and differentiation by the Cut transcription factor represents a tumor-suppressing mechanism in Drosophila. PLoS Genetics 8 (3), e1002582 (2012)

Manavella, P.; Koenig, D.; Weigel, D.: Plant secondary siRNA production determined by microRNA-duplex structure. Proceedings of the National Academy of Sciences of the United States of America 109 (7), pp. 2461 - 2466 (2012)

Posé, D.; Yant, L.; Schmid, M.: The end of innocence: flowering networks explode in complexity. Current Opinion in Plant Biology 15 (1), pp. 45 - 50 (2012)

Stegle, O.; Parts, L.; Piipari, M.; Winn, J.; Durbin, R.: Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses. Nature Protocols 7 (3), pp. 500 - 507 (2012)

Breakfield, N.; Corcoran, D.; Petricka, J.; Shen, J.; Sae-Seaw, J.; Rubio-Somoza, I.; Weigel, D.; Ohler, U.; Benfey, P.: High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis. Genome Research 22 (1), pp. 163 - 176 (2012)

Fusi, N.; Stegle, O.; Lawrence, N.: Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies. PLoS Computational Biology 8 (1), e1002330 (2012)

Smith, L.; Weigel, D.: On epigenetics and epistasis: hybrids and their non-additive interactions. EMBO Journal 31 (2), pp. 249 - 250 (2012)

Todesco, M.; Balasubramanian, S.; Cao, J.; Ott, F.; Balasubramanian, S.; Schneeberger, K.; Meyer, R.; Altmann, T.; Weigel, D.: Natural Variation in Biogenesis Efficiency of Individual Arabidopsis thaliana MicroRNAs. Current Biology 22 (2), pp. 166 - 170 (2012)

Weigel, D.: Natural variation in Arabidopsis: from molecular genetics to ecological genomics. Plant Physiology 158 (1), pp. 2 - 22 (2012)

Engel, D.; Kottler, V.; Malisi, C.; Röttig, M.; Willing, E.; Schultheiss, S.: Crowd-Sourcing Design: Sketch Minimization using Crowds for Feedback. In: 4th Human Computation Workshop (HCOMP 2012), WS-12-08, pp. 71 - 77. 4th Human Computation Workshop (HCOMP 2012), Toronto, ON, Canada, July 23, 2012. (2012)

Stegle, O.; Lippert, C.; Mooij, J.; Lawrence, N.; Borgwardt, K.: Efficient inference in matrix-variate Gaussian models with iid observation noise. In: Advances in Neural Information Processing Systems 24, pp. 630 - 638 (Eds. Shawe-Taylor, J.; Zemel, R.; Bartlett, P.; Pereira, F.; Weinberger, K.). Twenty-Fifth Annual Conference on Neural Information Processing Systems (NIPS 2011), Granada, Spain, December 12, 2011 - December 17, 2011. Curran, Red Hook, NY, USA (2012)

Stegle, O.; Roth, F.; Morris, Q.; Listgarten, J.: Personalized medicine: from genotypes and molecular phenotypes towards computed therapy. In: Biocomputing 2012: Proceedings of the Pacific Symposium, pp. 323 - 326 (Eds. Altman, R.; Dunker, A.; Hunter, L.; Murray, T.; Klein, T.). Pacific Symposium on Biocomputing (PSB 2012), Kohala Coast, HI, USA, January 03, 2012 - January 07, 2012. World Scientific Publishing, Singapore (2012)

Kraemer, U.; Hanikenne, M.; Kroymann, J.; Stein, R.; Hoereth, S.; Clemens, S.; Singh, V.; Lanz, C.; Wang, X.; Weigel, D. et al.; Mayakrishnan, R.; Cebula, J.; Kubigsteltig, I.; Hollaender-Czytko, H.: Arabidopsis halleri, a heavy-metal tolerant model species for studying plant adaptation to extreme environments. In 23rd International Conference on Arabidopsis Research (ICAR 2012), p. 17. 23rd International Conference on Arabidopsis Research (ICAR 2012), Wien, Austria, July 03, 2012 - July 07, 2012. (2012)

Williamson, R.; Koenig, D.; Josephs, E.; Hazzouri, K.; Weigel, D.; Wright, S.: Quantifying the strength of positive & purifying selection across the whole genome of outcrossing & selfing Capsella species. In Evolution 2012. Evolution 2012: American Society of Naturalists, Canadian Society for Ecology and Evolution, European Society for Evolutionary Biology Society for the Study of Evolution, Society of Systematic Biologists, Ottawa, Canada, July 06, 2012 - July 10, 2012. (2012)

Priebe, L.; Wolf, C.; Alexander, M.; Karbalai, N.; Fröhlich, H.; Stegle, O.; Kriegel, A.; Sander, T.; Czamara, D.; Mattheisen, M. et al.; Pütz, B.; Hillmer, A.; Altmann, A.; Kluck, N.; Schölkopf, B.; Borgwardt, K.; Schramm, J.; Hoffmann, P.; Becker, A.; Nöthen, M.; Müller-Myhsok, B.; Cichon, S.: Mapping genetic and epigenetic factors influencing human hippocampal gene expression. In European journal of human genetics, 20 (Supplement 1), C08-5, p. 27. European Human Genetics Conference (ESHG 2012), Nürnberg, Germany, June 23, 2012 - June 26, 2012. Nature Publishing Group (2012)

Polychronidou, M.; Sorge, S.; Ha, N.; Friedrich, J.; Bezdan, D.; Kaspar, P.; Schaefer, M.; Ossowski, S.; Henz, S.; Mundorf, J. et al.; Papagiannouli, F.; Lohmann, I.: The cis-regulatory code of Hox function in Drosophila. In 53rd Annual Drosophila Research Conference 2012, 30, p. 129. 53rd Annual Drosophila Research Conference 2012, Chicago, IL, USA, March 03, 2012 - March 11, 2012. (2012)

Wright, S.; Platts, A.; Haudry, A.; Williamson, R.; Hazzouri, K.; Vello, E.; Forczek, E.; Chantha, S.-C.; Joly, S.; Koenig, D. et al.; Mitchell-Olds, T.; Wing, R.; Weigel, D.; Schumaker, A.; Town, C.; Wang, X.; Schranz, W.; Pires, J.; Clark, R.; Steffen, J.; Toomajian, C.; Prochnik, S.; Jenkins, J.; Schmutz, J.; Rokhsar, D.; Harmsen, E.; Stinchcombe, J.; Harrison, P.; Bureau, T.; Schoen, D.; Moses, A.; Blanchette, M.: Comparative and Population Genomics in the Brassicaceae. In Plant & Animal Genome XX: Workshop Brassicas, W099. Plant & Animal Genome XX: Workshop Brassicas, San Diego, CA, USA, January 14, 2012. (2012)

Weigel, D.: Arabidopsis thaliana as a model system for the study of evolutionary questions. 23rd International Conference on Arabidopsis Research (ICAR 2012), Wien, Austria (2012)