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Sievers, C.; Willing, E.-M.; Hoffmann, M.; Dreyer, C.; Ramnarine, I.; Magurran, A.: Reasons for the invasive success of a guppy (Poecilia reticulata) population in Trinidad. PLoS One 7 (5), e0038404 (2012)
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Smith, L.; Hartmann, L.; Drewe, P.; Bohnert, R.; Kahles, A.; Lanz, C.; Rätsch, G.: Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes. RNA Biology 9 (5), pp. 596 - 609 (2012)
23.
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Karaletsos, T.; Stegle, O.; Dreyer, C.; Winn, J.; Borgwardt, K.: ShapePheno: Unsupervised extraction of shape phenotypes from biological image collections. Bioinformatics 28 (7), pp. 1001 - 1008 (2012)
24.
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Stranger, B.; Montgomery, S.; Dimas, A.; Parts, L.; Stegle, O.; Ingle, C.; Sekowska, M.; Smith, G.; Evans, D.; Gutierrez-Arcelus, M. et al.; Price, A.; Towfique, R.; Nisbett, J.; Nica, A.; Beazley, C.; Durbin, R.; Deloukas, P.; Dermitzakis, E.: Patterns of cis regulatory variation in diverse human populations. PLoS Genetics 8 (4), e1002639 (2012)
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Gretton, A.; Borgwardt, K.; Rasch, M.; Schölkopf, B.; Smola, A.: A Kernel Two-Sample Test. Proceedings of Machine Learning Research 13, pp. 723 - 773 (2012)
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Song, L.; Smola, A.; Gretton, A.; Bedo, J.; Borgwardt, K.: Feature Selection via Dependence Maximization. Proceedings of Machine Learning Research 13, pp. 1393 - 1434 (2012)
27.
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Zhai, Z.; Ha, N.; Papagiannouli, F.; Hamacher-Brady, A.; Brady, N.; Sorge, S.; Bezdan, D.; Lohmann, I.: Antagonistic regulation of apoptosis and differentiation by the Cut transcription factor represents a tumor-suppressing mechanism in Drosophila. PLoS Genetics 8 (3), e1002582 (2012)
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Manavella, P.; Koenig, D.; Weigel, D.: Plant secondary siRNA production determined by microRNA-duplex structure. Proceedings of the National Academy of Sciences of the United States of America 109 (7), pp. 2461 - 2466 (2012)
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Posé, D.; Yant, L.; Schmid, M.: The end of innocence: flowering networks explode in complexity. Current Opinion in Plant Biology 15 (1), pp. 45 - 50 (2012)
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Stegle, O.; Parts, L.; Piipari, M.; Winn, J.; Durbin, R.: Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses. Nature Protocols 7 (3), pp. 500 - 507 (2012)
31.
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Breakfield, N.; Corcoran, D.; Petricka, J.; Shen, J.; Sae-Seaw, J.; Rubio-Somoza, I.; Weigel, D.; Ohler, U.; Benfey, P.: High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis. Genome Research 22 (1), pp. 163 - 176 (2012)
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Fusi, N.; Stegle, O.; Lawrence, N.: Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies. PLoS Computational Biology 8 (1), e1002330 (2012)
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Smith, L.; Weigel, D.: On epigenetics and epistasis: hybrids and their non-additive interactions. EMBO Journal 31 (2), pp. 249 - 250 (2012)
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Todesco, M.; Balasubramanian, S.; Cao, J.; Ott, F.; Balasubramanian, S.; Schneeberger, K.; Meyer, R.; Altmann, T.; Weigel, D.: Natural Variation in Biogenesis Efficiency of Individual Arabidopsis thaliana MicroRNAs. Current Biology 22 (2), pp. 166 - 170 (2012)
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Weigel, D.: Natural variation in Arabidopsis: from molecular genetics to ecological genomics. Plant Physiology 158 (1), pp. 2 - 22 (2012)

Proceedings (1)

36.
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Borgwardt, K.; Rätsch, G. (Eds.): Sixth International Workshop on Machine Learning in Systems Biology (MLSB 2012). Sixth International Workshop on Machine Learning in Systems Biology at ECCB 2012, Basel, Switzerland, September 08, 2012 - September 09, 2012. (2012)

Conference Paper (3)

37.
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Engel, D.; Kottler, V.; Malisi, C.; Röttig, M.; Willing, E.; Schultheiss, S.: Crowd-Sourcing Design: Sketch Minimization using Crowds for Feedback. In: 4th Human Computation Workshop (HCOMP 2012), WS-12-08, pp. 71 - 77. 4th Human Computation Workshop (HCOMP 2012), Toronto, ON, Canada, July 23, 2012. (2012)
38.
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Stegle, O.; Lippert, C.; Mooij, J.; Lawrence, N.; Borgwardt, K.: Efficient inference in matrix-variate Gaussian models with iid observation noise. In: Advances in Neural Information Processing Systems 24, pp. 630 - 638 (Eds. Shawe-Taylor, J.; Zemel, R.; Bartlett, P.; Pereira, F.; Weinberger, K.). Twenty-Fifth Annual Conference on Neural Information Processing Systems (NIPS 2011), Granada, Spain, December 12, 2011 - December 17, 2011. Curran, Red Hook, NY, USA (2012)
39.
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Stegle, O.; Roth, F.; Morris, Q.; Listgarten, J.: Personalized medicine: from genotypes and molecular phenotypes towards computed therapy. In: Biocomputing 2012: Proceedings of the Pacific Symposium, pp. 323 - 326 (Eds. Altman, R.; Dunker, A.; Hunter, L.; Murray, T.; Klein, T.). Pacific Symposium on Biocomputing (PSB 2012), Kohala Coast, HI, USA, January 03, 2012 - January 07, 2012. World Scientific Publishing, Singapore (2012)

Meeting Abstract (9)

40.
Meeting Abstract
Chae, E.; Bomblies, K.; Kim, S.-T.; Karelina, D.; Ossowski, S.; Rowan, B.; Demar, M.; Lanz, C.; Weigel, D.: Repeated evolution of genetic incompatibilities involving a single NB-LRR gene cluster: lessons from hybrid necrosis studies in Arabidopsis thaliana. In XV Molecular Plant-Microbe Interactions (IS-MPMI 2012), CS12-6, p. 123. XV Molecular Plant-Microbe Interactions (IS-MPMI 2012), Kyoto, Japan, July 29, 2012 - August 02, 2012. (2012)
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