Weigel, D.; Mott, R.: The 1001 genomes project for Arabidopsis thaliana. Genome Biology 10 (5), 107 (2009)

Molnar, A.; Bassett, A.; Thuenemann, E.; Schwach, F.; Karkare, S.; Ossowski, S.; Weigel, D.; Baulcombe, D.: Highly specific gene silencing by artificial microRNAs in the unicellular alga Chlamydomonas reinhardtii. The Plant Journal 58 (1), pp. 165 - 174 (2009)

Felippes, F.; Weigel, D.: Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173. EMBO Reports 10 (3), pp. 264 - 270 (2009)

Guo, Y.-L.; Bechsgaard, J.; Slotte, T.; Neuffer, B.; Lascoux, M.; Weigel, D.; Schierup, M.: Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck. Proceedings of the National Academy of Sciences of the United States of America 106 (13), pp. 5246 - 5251 (2009)

Stöbe, P.; Stein, S.; Habring-Müller, A.; Bezdan, D.; Fuchs, A.; Hueber, S.; Wu, H.; Lohmann, I.: Multifactorial regulation of a hox target gene. PLoS Genetics 5 (3), e1000412 (2009)

Weigel, D.; Glazebrook, J.: Dellaporta miniprep for plant DNA isolation. Cold Spring Harbor protocols 4 (3), pdb.prot5178 (2009)

Weigel, D.; Glazebrook, J.: Quick miniprep for plant DNA isolation. Cold Spring Harbor protocols 4 (3), pdb.prot5179 (2009)

Balasubramanian, S.; Schwartz, C.; Singh, A.; Warthmann, N.; Kim, M.; Maloof, J.; Loudet, O.; Trainer, G.; Dabi, T.; Borevitz, J. et al.; Chory, J.; Weigel, D.: QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. PLoS One 4 (2), e4318 (2009)

Plantegenet, S.; Weber, S.; Goldstein, D.; Zeller, G.; Nussbaumer, C.; Thomas, J.; Weigel, D.; Harshman, K.; Hardtke, C.: Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance. Molecular Systems Biology 5, 242 (2009)

Sureshkumar, S.; Todesco, M.; Schneeberger, K.; Harilal, R.; Balasubramaniam, S.; Weigel, D.: A genetic defect caused by a triplet repeat expansion in Arabidopsis thaliana. Science 323 (5917), pp. 1060 - 1063 (2009)

Fulton, L.; Batoux, M.; Vaddepalli, P.; Yadav, R.; Busch, W.; Andersen, S.; Jeong, S.; Lohmann, J.; Schneitz, K.: DETORQUEO, QUIRKY, and ZERZAUST represent novel components involved in organ development mediated by the receptor-like kinase STRUBBELIG in Arabidopsis thaliana. PLoS Genetics 5 (1), e1000355 (2009)

Kumar, M.; Busch, W.; Birke, H.; Kemmerling, B.; Nürnberger, T.; Schöffl, F.: Heat shock factors HsfB1 and HsfB2b are involved in the regulation of Pdf1.2 expression and pathogen resistance in Arabidopsis. Molecular Plant 2 (1), pp. 152 - 165 (2009)

Naouar, N.; Vandepoele, K.; Lammens, T.; Casneuf, T.; Zeller, G.; van Hummelen, P.; Weigel, D.; Rätsch, G.; Inzé, D.; Kuiper, N. et al.; De Veylder, L.; Vuylsteke, M.: Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes. The Plant Journal 57 (1), pp. 184 - 194 (2009)

Rattray, M.; Stegle, O.; Sharp, K.; Winn, J.: Inference algorithms and learning theory for Bayesian sparse factor analysis. International Workshop on Statistical-Mechanical Informatics 2009 (IW-SMI 2009), Kyoto, Japan, September 13, 2009 - September 16, 2009. Journal of Physics: Conference Series 197 (1), 012002, (2009)

Stegle, O.; Denby, K.; Wild, D.; McHattie, S.; Mead, A.; Ghahramani, Z.; Borgwardt, K.: Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series. In: German Conference on Bioinformatics: GCB 2009, pp. 133 - 142 (Eds. Grosse, I.; Neumann, S.; Posch, S.; Schreiber, F.; Stadler, P.). German Conference on Bioinformatics 2009 (GCB 2009), Halle, Germany, September 28, 2009 - September 30, 2009. Gesellschaft für Informatik, Bonn, Germany (2009)

Lippert, C.; Shervashidze, N.; Stegle, O.: Relational models for generating labeled real-world graphs. In: 7th International Workshop on Mining and Learning with Graphs (MLG 2009). 7th International Workshop on Mining and Learning with Graphs (MLG 2009), Leuven, Belgium, July 02, 2009 - July 04, 2009. (2009)

Kondor, R.; Shervashidze, N.; Borgwardt, K.: The graphlet spectrum. In: ICML '09: Proceedings of the 26th Annual International Conference on Machine Learning, pp. 529 - 536 (Eds. Danyluk, A.; Bottou, L.; Littman, M.). 26th International Conference on Machine Learning (ICML 2009), Montreal, Canada, June 14, 2009 - June 18, 2009. ACM Press, New York, NY, USA (2009)

Schweikert, G.; Widmer, C.; Schölkopf, B.; Rätsch, G.: An Empirical Analysis of Domain Adaptation Algorithms for Genomic Sequence Analysis. In: Advances in neural information processing systems 21, M14, pp. 1433 - 1440 (Eds. Koller, D.; Schuurmans, D.; Bengio, Y.; Bottou, L.). Twenty-Second Annual Conference on Neural Information Processing Systems (NIPS 2008), Vancouver, BC, Canada, December 08, 2008 - December 10, 2008. Curran, Red Hook, NY, USA (2009)

Stegle, O.; Denby, K.; Wild, D.; Ghahramani, Z.; Borgwardt, K.: A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. In: Research in Computational Molecular Biology: 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009, pp. 201 - 216 (Ed. Batzoglou, S.). 13th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2009), Tucson, AZ, USA, May 18, 2009 - May 21, 2009. Springer, Berlin, Germany (2009)

Thoma, M.; Cheng, H.; Gretton, A.; Han, J.; Kriegel, H.-P.; Smola, A.; Song, L.; Yu, P.; Yan, X.; Borgwardt, K.: Near-optimal supervised feature selection among frequent subgraphs. In: 9th SIAM Conference on Data Mining (SDM 2009), pp. 1076 - 1087 (Eds. Park, H.; Parthasarathy, S.; Liu, H.). 9th SIAM Conference on Data Mining (SDM 2009), Sparks, NV, USA, April 30, 2009 - May 02, 2009. Philadelphia, PA, USA, Society for Industrial and Applied Mathematics (2009)