Guo, Y.-L.; Hu, T.; Pattyn, P.; Bakker, E.; Cao, J.; Cheng, J.-F.; Clark, R.; Fahlgren, N.; Fawcett, J.; Grimwood, J. et al.; Gundlach, H.; Haberer, G.; Hollister, J.; Ossowski, S.; Ottilar, R.; Salamov, A.; Schneeberger, K.; Spannagl, M.; Wang, X.; Yang, L.; Nasrallah, M.; Bergelson, J.; Carrington, J.; Gaut, B.; Schmutz, J.; Mayer, K.; Van de Peer, Y.; Grigoriev, I.; Nordborg, M.; Weigel, D.: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany (2011)

Kim, S.-T.; Mao, J.-F.; Hagmann, J.; Lanz, C.; Cao, J.; Guo, Y.-L.; Schneeberger, K.; Weigel, D.: Contrasting whole-genome sequence diversity in the selfer Arabidopsis thaliana and the outcrosser A. lyrata. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany (2011)

Koenig, D.; Slotte, T.; Hagmann, J.; Neuffer, B.; Weigel, D.: Population genomic analysis of speciation and radiation in Capsella rubella. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany (2011)

Kottler, V.; Weigel, D.; Dreyer, C.: Guppy golden and blue mutants provide novel insights into pattern formation of coloration. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany (2011)

Mao, J.-F.; Wang, X.-R.: Detecting niche divergence in an allopatric hybrid species complex of Pinus densata, P. tabuliformis and P. yunnanensis. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany (2011)

Sharma, E.; Zipprich, G.; Henz, S.; Dreyer, C.; Weigel, D.: Transcriptome of Poecilia reticulata and comparative analysis for identification of sex-linked loci associated with evolution of the guppy sex chromosomes. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany (2011)

Wang, G.; Stegle, O.; Rowan, B.; Dillon, M.; Weigel, D.: Detecting climate signals in genomes: A GWA approach to find footprints of climate selection in the Arabidopsis thaliana genome using new measures of climatic variability. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany (2011)

Behr, J.; Bohnert, R.; Kahles, A.; Schweikert, G.; Zeller, G.; Hartmann, L.; Rätsch, G.: Accurate RNA-seq based de novo annotation using mGene.ngs. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB/ECCB 2011), Wien, Austria (2011)

Grimm, D.; Hagmann, J.; Koenig, D.; Weigel, D.; Borgwardt, K.: Support Vector Machines for finding deletions and short insertions using paired-end short reads. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB ECCB 2011), Wien, Austria (2011)

Jean, G.; Raetsch, G.; Kahles, A.; Sonnenburg, S.; Schneeberger, K.; Hagmann, J.; De Bona, F.; Weigel, D.: Fast and Accurate RNA-Seq alignments with PALMapper. 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology (ISMB ECCB 2011), Wien, Austria (2011)

Drewe, P.; Stegle, O.; Behr, J.; Clark, R.; Rätsch, G.; Mott, R.: Multiple reference genomes and transcriptomes for Arabidopsis thaliana. 4th Berlin Summer Meeting: “Computational & Experimental Molecular Biology Meet”, Berlin, Germany (2011)

Drewe, P.; Stegle, O.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical tests for detecting differential RNA-transcript expression. 4th Berlin Summer Meeting: “Computational & Experimental Molecular Biology Meet”, Berlin, Germany (2011)

Reinke, V.; Ewing, B.; Gerstein, M.; Green, P.; Henz, S.; High, A.; Hillier, L.; Kato, M.; Leng, J.; MacCoss, M. et al.; Merrihew, G.; Miller, D.; Rätsch, G.; Robilotto, R.; Slack, F.; Spencer, W.; Strasbourger, P.; Thompson, O.; Wang, G.; Zeller, G.; Waterston, R.: The C. elegans transcriptome. 18th International C. Elegans Meeting, Los Angeles, CA, USA (2011)

Salomé, P.; Oliva, M.; Krämer, U.; Weigel, D.: Tuning of circadian period by micronutrients availability in Arabidopsis. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA (2011)

Van Buskirk, E.; Wang, H.; Li, M.; Galvao, R.; Ma, T.; Weigel, D.; Chen, M.: Genetic Dissection of Early Phytochrome Signaling Mechanisms. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA (2011)

Wahl, V.; Ponnu, J.; Schlereth, A.; Arrivault, S.; Franke, A.; Feil, R.; Lunn, J.; Schmid, M.; Stitt, M.: Trehalose 6-phosphate acts at the shoot apex to induce flowering in Arabidopsis thaliana. 22nd International Conference on Arabidopsis Research (ICAR 2011), Madison, WI, USA (2011)

Forestan, C.; Mainieri, D.; Engledow, S.; Rossi, V.; Gutierrez-Marcos, C.; Weigel, D.; Rouster, J.; Varotto, S.: Environmental stress-induced epiallele formation and inheritance in Zea mays: a multiple approach. 53rd Annual Maize Genetics Conference, St. Charles, IL, USA (2011)

Behr, J.; Zeller, G.; Schweikert, G.; Hartmann, L.; Smith, L.; Rätsch, G.: De Novo RNA-seq-based genome annotation. Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference: Genome Informatics, Hinxton, UK (2010)

Stegle, O.; Drewe, P.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts. Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference: Genome Informatics, Hinxton, UK (2010)

Shervashidze, N.; Smola, A.; Borgwardt, K.: Scalable graph kernels with approximate matching of subtree patterns. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)