Publikationen von J Hagmann

Zeitschriftenartikel (25)

1.
Zeitschriftenartikel
Hüther, P.; Hagmann, J.; Nunn, A.; Kakoulidou, I.; Pisupati, R.; Langenberger, D.; Weigel, D.; Johannes, F.; Schultheiss, S.; Becker, C.: MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data. Quantitative Plant Biology 3, e19 (2022)
2.
Zeitschriftenartikel
Zacharaki, V.; Ponnu, J.; Crepin, N.; Langenecker, T.; Hagmann, J.; Skorzinski, N.; Musialak-Lange, M.; Wahl, V.; Rolland, F.; Schmid, M.: Impaired KIN10 function restores developmental defects in the Arabidopsis trehalose 6-phosphate synthase1 (tps1) mutant. New Phytologist 235 (1), S. 220 - 233 (2022)
3.
Zeitschriftenartikel
Fertey, J.; Hagmann, J.; Ruscheweyh, H.-J.; Munk, C.; Kjaer, S.; Huson, D.; Haedicke-Jarboui, J.; Stubenrauch, F.; Iftner, T.: Methylation of CpG 5962 in L1 of the human papillomavirus 16 genome as a potential predictive marker for viral persistence: A prospective large cohort study using cervical swab samples. Cancer Medicine 9 (3), S. 1058 - 1068 (2020)
4.
Zeitschriftenartikel
Barragan, C.; Wu, R.; Kim, S.-T.; Xi, W.; Habring, A.; Hagmann, J.; Van de Weyer, A.-L.; Zaidem, M.; Ho, W.; Wang, G. et al.; Bezrukov, I.; Weigel, D.; Chae, E.: RPW8/HR repeats control NLR activation in Arabidopsis thaliana. PLoS Genetics 15 (7), e1008313 (2019)
5.
Zeitschriftenartikel
Koenig, D.; Hagmann, J.; Li, R.; Bemm, F.; Slotte, T.; Neuffer, B.; Wright, S.; Weigel, D.: Long-term balancing selection drives evolution of immunity genes in Capsella. eLife 8, e43606 (2019)
6.
Zeitschriftenartikel
Exposito-Alonso, M.; Becker, C.; Schuenemann, V.; Reiter, E.; Setzer, C.; Slovak, R.; Brachi, B.; Hagmann, J.; Grimm, D.; Chen, J. et al.; Busch, W.; Bergelson, J.; Ness, R.; Krause, J.; Burbano, H.; Weigel, D.: The rate and potential relevance of new mutations in a colonizing plant lineage. PLoS Genetics 14 (2), e1007155 (2018)
7.
Zeitschriftenartikel
Lang, P.; Christie, M.; Dogan, E.; Schwab, R.; Hagmann, J.; Van de Weyer, A.-L.; Scacchi, E.; Weigel, D.: A Role for the F-Box Protein HAWAIIAN SKIRT in Plant microRNA Function. Plant Physiology 176 (1), S. 730 - 741 (2018)
8.
Zeitschriftenartikel
Mao, H.; Aryal, B.; Langenecker, T.; Hagmann, J.; Geisler, M.; Grebe, M.: Arabidopsis BTB/POZ protein-dependent PENETRATION3 trafficking and disease susceptibility. Nature Plants 3 (11), S. 854 - 858 (2017)
9.
Zeitschriftenartikel
Hagmann, J.; Becker, C.: Assessing Distribution and Variation of Genome-Wide DNA Methylation Using Short-Read Sequencing. Methods in Molecular Biology 1610 (2017)
10.
Zeitschriftenartikel
Mable, B.; Hagmann, J.; Kim, S.-T.; Adam, A.; Kilbride, E.; Weigel, D.; Stift, M.: What causes mating system shifts in plants? Arabidopsis lyrata as a case study. Heredity 118 (1), S. 52 - 63 (2017)
11.
Zeitschriftenartikel
Li, Z.-W.; Chen, X.; Wu, Q.; Hagmann, J.; Han, T.-S.; Zou, Y.-P.; Ge, S.; Guo, Y.-L.: On the Origin of De Novo Genes in Arabidopsis thaliana Populations. Genome Biology and Evolution 8 (7), S. 2190 - 2202 (2016)
12.
Zeitschriftenartikel
Wibowo, A.; Becker, C.; Marconi, G.; Durr, J.; Price, J.; Hagmann, J.; Papareddy, R.; Putra, H.; Kageyama, J.; Becker, J. et al.; Weigel, D.; Gutierrez-Marcos, J.: Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity. eLife 5, e1354 (2016)
13.
Zeitschriftenartikel
Karlsson, P.; Christie, M.; Seymour, D.; Wang, H.; Wang, X.; Hagmann, J.; Kulcheski, F.; Manavella, P.: KH domain protein RCF3 is a tissue-biased regulator of the plant miRNA biogenesis cofactor HYL1. Proceedings of the National Academy of Sciences of the United States of America 112 (45), S. 14096 - 14101 (2015)
14.
Zeitschriftenartikel
Lutz, U.; Posé, D.; Pfeifer, M.; Gundlach, H.; Hagmann, J.; Wang, C.; Weigel, D.; Mayer, K.; Schmid, M.; Schwechheimer, C.: Modulation of Ambient Temperature-Dependent Flowering in Arabidopsis thaliana by Natural Variation of FLOWERING LOCUS M. PLoS Genetics 11 (10), e1005588 (2015)
15.
Zeitschriftenartikel
Kolb, C.; Nagel, M.-K.; Kalinowska, K.; Hagmann, J.; Ichikawa, M.; Anzenberger, F.; Alkofer, A.; Sato, M.; Braun, P.; Isono, E.: FYVE1 is essential for vacuole biogenesis and intracellular trafficking in Arabidopsis. Plant Physiology 167 (4), S. 1361 - 1373 (2015)
16.
Zeitschriftenartikel
Willing, E.-M.; Rawat, V.; Mandakova, T.; Maumus, F.; James, G.; Nordstroem, K.; Becker, C.; Warthmann, N.; Chica, C.; Szarzynska, B. et al.; Zytnicki, M.; Albani, M.; Kiefer, C.; Bergonzi, S.; Castaings, L.; Mateos, J.; Berns, M.; Bujdoso, N.; Piofczyk, T.; de Lorenzo, L.; Barrero-Sicilia, C.; Mateos, I.; Piednoel, M.; Hagmann, J.; Chen-Min-Tao, R.; Iglesias-Fernandez, R.; Schuster, S.; Alonso-Blanco, C.; Roudier, F.; Carbonero, P.; Paz-Ares, J.; Davis, S.; Pecinka, A.; Quesneville, H.; Colot, V.; Lysak, M.; Weigel, D.; Coupland, G.; Schneeberger, K.: Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants 1 (2), 14023 (2015)
17.
Zeitschriftenartikel
Hagmann, J.; Becker, C.; Müller, J.; Stegle, O.; Meyer, R.; Wang, G.; Schneeberger, K.; Fitz, J.; Altmann, T.; Bergelson, J. et al.; Borgwardt, K.; Weigel, D.: Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage. PLoS Genetics 11 (1), e1004920 (2015)
18.
Zeitschriftenartikel
Lim, E.-C.; Müller, J.; Hagmann, J.; Henz, S.; Kim, S.-T.; Weigel, D.: Trowel: a fast and accurate error correction module for Illumina sequencing reads. Bioinformatics 30 (22), S. 3264 - 3265 (2014)
19.
Zeitschriftenartikel
Seymour, D.; Koenig, D.; Hagmann, J.; Becker, C.; Weigel, D.: Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization. PLoS Genetics 10 (11), e1004785 (2014)
20.
Zeitschriftenartikel
Grimm, D.; Hagmann, J.; Koenig, D.; Weigel, D.; Borgwardt, K.: Accurate indel prediction using paired-end short reads. BMC Genomics 14, 132 (2013)
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