Rubio-Somoza, I.; Weigel, D.: MicroRNA networks and developmental plasticity in plants. Trends in Plant Science 16 (5), pp. 258 - 264 (2011)

Schneeberger, K.; Weigel, D.: Fast-forward genetics enabled by new sequencing technologies. Trends in Plant Science 16 (5), pp. 282 - 288 (2011)

Sonmez, C.; Bäurle, I.; Magusin, A.; Dreos, R.; Laubinger, S.; Weigel, D.; Dean, C.: RNA 3' processing functions of Arabidopsis FCA and FPA limit intergenic transcription. Proceedings of the National Academy of Sciences of the United States of America 108 (20), pp. 8508 - 8513 (2011)

Fenselau de Felippes, F.; Ott, F.; Weigel, D.: Comparative analysis of non-autonomous effects of tasiRNAs and miRNAs in Arabidopsis thaliana. Nucleic Acids Research (London) 39 (7), pp. 2880 - 2889 (2011)

Gou, J.-Y.; Felippes, F.; Liu, C.-L.; Weigel, D.; Wang, J.-W.: Negative regulation of anthocyanin biosynthesis in Arabidopsis by a miR156-targeted SPL transcription factor. Plant Cell 23 (4), pp. 1512 - 1522 (2011)

Kam-Thong, T.; Czamara, D.; Tsuda, K.; Borgwardt, K.; Lewis, C.; Erhardt-Lehmann , A.; Hemmer, B.; Rieckmann, P.; Daake, M.; Weber, F. et al.; Wolf, C.; Ziegler, A.; Pütz, B.; Holsboer , F.; Schölkopf, B.; Müller-Myhsok, B.: EPIBLASTER-fast exhaustive two-locus epistasis detection strategy using graphical processing units. European Journal of Human Genetics 19 (4), pp. 465 - 471 (2011)

Manavella, P.; Weigel, D.; Wu, L.: Argonaute10 as a miRNA locker. Cell 145 (2), pp. 173 - 174 (2011)

Moyroud, E.; Gómez Minguet, E.; Ott, F.; Yant, L.; Posé, D.; Monniaux, M.; Blanchet, S.; Bastien, O.; Thévenon, E.; Weigel, D. et al.; Schmid, M.; Parcy, F.: Prediction of regulatory interactions from genome sequences using a biophysical model for the Arabidopsis LEAFY transcription factor. Plant Cell 23 (4), pp. 1293 - 1306 (2011)

Salomé, P.; Bomblies, K.; Fitz, J.; Laitinen, R.; Yant, L.; Weigel, D.: The recombination landscape in Arabidopsis thaliana F2 populations. Heredity 108 (4), pp. 447 - 455 (2011)

Eichner, J.; Zeller, G.; Laubinger, S.; Rätsch, G.: Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays. BMC Bioinformatics 12, 55 (2011)

Hollister, J.; Smith, L.; Guo, Y.-L.; Ott, F.; Weigel, D.; Gaut, B.: Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata. Proceedings of the National Academy of Sciences of the United States of America 108 (6), pp. 2322 - 2327 (2011)

Spencer, W.; Zeller, G.; Watson, J.; Henz, S.; Watkins, K.; McWhirter, R.; Petersen, S.; Sreedharan, V.; Widmer, C.; Jo, J. et al.; Reinke, V.; Petrella, L.; Strohme, S.; Von Stetina, S.; Katz, M.; Shaham, S.; Rätsch, G.; Miller, D.: A spatial and temporal map of C. elegans gene expression. Genome Research 21 (2), pp. 325 - 341 (2011)

Wang, J.-W.; Park, M.-Y.; Wang, L.; Koo, Y.; Chen, X.-Y.; Weigel, D.; Poethig, R.: miRNA control of vegetative phase change in trees. PLoS Genetics 7 (2), e1002012 (2011)

Watson, C.; Gray, S.; Hoffmann, M.; Lubieniecki, K.; Joy, J.; Sandkam, B.; Weigel, D.; Loew, E.; Dreyer, C.; Davidson, W. et al.; Breden, F.: Gene duplication and divergence of long wavelength-sensitive opsin genes in the guppy, Poecilia reticulata. Journal of Molecular Evolution: the Journal of the International Society of Molecular Evolution 72 (2), pp. 240 - 252 (2011)

Weigel, D.: What developmental biologists can learn from plant pathogens. Developmental Cell 20 (2), p. e2 (2011)

Gorman, K.; Christians, J.; Parent, J.; Ahmadi, R.; Weigel, D.; Dreyer, C.; Breden, F.: A major QTL controls susceptibility to spinal curvature in the curveback guppy. BMC Genetics 12, 16 (2011)

Hallem, E.; Spencer, W.; McWhirter, R.; Zeller, G.; Henz, S.; Rätsch, G.; Miller, D.; Horvitz, H.; Sternberg, P.; Ringstad, N.: Receptor-type guanylate cyclase is required for carbon dioxide sensation by Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America 108 (1), pp. 254 - 259 (2011)

Oberhettinger, P.; Schütz, M.; Raddatz, G.; Keller, H.; Autenrieth, I.; Linke, D.: The sequence of the pYV virulence plasmid from Yersinia enterocolitica strain WA-314 biogroup 1B serotype O:8. Plasmid 65 (1), pp. 20 - 24 (2011)

Parts, L.; Stegle, O.; Winn, J.; Durbin, R.: Joint Genetic Analysis of Gene Expression Data with Inferred Cellular Phenotypes. PLoS Genetics 7 (1), e1001276 (2011)

Borgwardt, K.: Kernel Methods in Bioinformatics. In: Handbook of Statistical Bioinformatics, pp. 317 - 334 (Eds. Lu, H.-S.; Schölkopf, B.; Zhao, H.). Springer, Berlin, Germany (2011)