Journal Article (418)

21.
Journal Article
Martinez-Goikoetxea, M.; Lupas, A.: New protein families with hendecad coiled coils in the proteome of life. Journal of Structural Biology 215 (3), 108007 (2023)
22.
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Maksymenko, K.; Maurer, A.; Aghaallaei, N.; Barry, C.; Borbarán-Bravo, N.; Ullrich, T.; Dijkstra, T.; Hernandez-Alvarez, B.; Müller, P.; Lupas, A. et al.; Skokowa, J.; ElGamacy, M.: The design of functional proteins using tensorized energy calculations. Cell Reports Methods 3 (8), 100560 (2023)
23.
Journal Article
Podobnik, M.; Singh, A.; Fu, Z.; Dooley, C.; Frohnhöfer, H.; Firlej, M.; Stednitz, S.; Elhabashy, H.; Weyand, S.; Weir, J. et al.; Lu, J.; Nüsslein-Volhard, C.; Irion, U.: kcnj13 regulates pigment cell shapes in zebrafish and has diverged by cis-regulatory evolution between Danio species. Development 150 (16), dev.201627 (2023)
24.
Journal Article
Wu, Y.; Chen, K.-W.; Li, Y.-N.; Qiu, K.-Y.; Lu, G.; Shu, T.; Sun, T.-Y.; Hou , Z.-Q.; Wu, Y.-D.; Yu, L.-J.: Propeptide-Mediated Allosteric Regulation of Xylanase Xyl-1: An Integrated Experimental and Computational Analysis. Journal of Agricultural and Food Chemistry 71 (30), pp. 11692 - 11703 (2023)
25.
Journal Article
Braun, V.; Ratcliff, A.; Celia, H.; Buchanan, S.: Energization of Outer Membrane Transport by the ExbB ExbD Molecular Motor. Journal of Bacteriology 205 (6), e0003523 (2023)
26.
Journal Article
Grandchamp, A.; Kühl, L.; Lebherz, M.; Brüggemann, K.; Parsch, J.; Bornberg-Bauer, E.: Population genomics reveals mechanisms and dynamics of de novo expressed open reading frame emergence in Drosophila melanogaster. Genome Research 33 (6), pp. 872 - 890 (2023)
27.
Journal Article
Fuchs, A.: Specific, sensitive and quantitative protein detection by in-gel fluorescence. Nature Communications 14 (1), 2505 (2023)
28.
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Böhning, J.; Dobbelstein, A.; Sulkowski, N.; Eilers, K.; von Kügelgen, A.; Tarafder, A.; Peak-Chew, S.-Y.; Skehel, M.; Alva, V.; Filloux, A. et al.; Bharat, T.: Architecture of the biofilm-associated archaic Chaperone-Usher pilus CupE from Pseudomonas aeruginosa. PLoS Pathogens 19 (4), e1011177 (2023)
29.
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Heames, B.; Buchel, F.; Aubel, M.; Tretyachenko, V.; Loginov, D.; Novák, P.; Lange, A.; Bornberg-Bauer, E.; Hlouchová, K.: Experimental characterization of de novo proteins and their unevolved random-sequence counterparts. Nature Ecology & Evolution 7 (4), pp. 570 - 580 (2023)
30.
Journal Article
Iyengar, B.; Bornberg-Bauer, E.: Neutral models of de novo gene emergence suggest that gene evolution has a preferred trajectory. Molecular Biology and Evolution 40 (4), msad079 (2023)
31.
Journal Article
von Kügelgen, A.; van Dorst, S.; Yamashita, K.; Sexton, D.; Tocheva, E.; Murshudov, G.; Alva, V.; Bharat, T.: Interdigitated immunoglobulin arrays form the hyperstable surface layer of the extremophilic bacterium Deinococcus radiodurans. Proceedings of the National Academy of Sciences of the United States of America 120 (16), e2215808120 (2023)
32.
Journal Article
Aubel, M.; Eicholt, L.; Bornberg-Bauer, E.: Assessing structure and disorder prediction tools for de novo emerged proteins in the age of machine learning. F1000Research (2023)
33.
Journal Article
Kuchta, R.; Heim, C.; Herrmann, A.; Maiwald, S.; Ng, Y.; Sosič, I.; Keuler, T.; Krönke, J.; Gütschow, M.; Hartmann, M. et al.; Steinebach, C.: Accessing three-branched high-affinity cereblon ligands for molecular glue and protein degrader design. RSC Chemical Biology 4 (3), pp. 229 - 234 (2023)
34.
Journal Article
Aubel, M.; Bornberg-Bauer, E.: Introducing creative destruction as a mechanism in protein evolution. Proceedings of the National Academy of Sciences of the United States of America 120 (6), e2220460120 (2023)
35.
Journal Article
Mantovani, O.; Haffner, M.; Selim, K.; Hagemann, M.; Forchhammer, K.: Roles of second messengers in the regulation of cyanobacterial physiology: the carbon-concentrating mechanism and beyond. microLife 4, uqad008 (2023)
36.
Journal Article
Selim, K.; Haffner, M.; Mantovani, O.; Albrecht, R.; Zhu, H.; Hagemann, M.; Forchhammer, K.; Hartmann, M.: Carbon signaling protein SbtB possesses atypical redox-regulated apyrase activity to facilitate regulation of bicarbonate transporter SbtA. Proceedings of the National Academy of Sciences of the United States of America 120 (8), e2205882120 (2023)
37.
Journal Article
Selim, K.; Zimmer, E.: SbtB: der fehlende Sensor für anorganischen Kohlenstoff in Cyanobakterien. Biospektrum 29 (2), pp. 140 - 143 (2023)
38.
Journal Article
Bakker, R.; Ellers, J.; Roelofs, D.; Vooijs, R.; Dijkstra, T.; van Gestel, C.; Hoedjes, K.: Combining time-resolved transcriptomics and proteomics data for Adverse Outcome Pathway refinement in ecotoxicology. Science of the Total Environment 869, 161740 (2023)
39.
Journal Article
Heim, C.; Spring, A.-K.; Kirchgäßner, S.; Schwarzer, D.; Hartmann, M.: Cereblon neo-substrate binding mimics the recognition of the cyclic imide degron. Biochemical and Biophysical Research Communications 646, pp. 30 - 35 (2023)
40.
Journal Article
Martinez-Goikoetxea, M.; Lupas, A.: A conserved motif suggests a common origin for a group of proteins involved in the cell division of Gram-positive bacteria. PLoS One 18 (1), e0273136 (2023)
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