Publications
_{Protein Evolution}

Frickey, T.; Lupas, A.: CLANS: a Java application for visualizing protein families based on pairwise similarity. Bioinformatics 20 (18), pp. 3702 - 3704 (2004)

Proikas-Cezanne, T.; Waddell, S.; Gaugel, A.; Frickey, T.; Lupas, A.; Nordheim, A.: WIPI-1alpha (WIPI49), a member of the novel 7-bladed WIPI protein family, is aberrantly expressed in human cancer and is linked to starvation-induced autophagy. Oncogene 23 (58), pp. 9314 - 9325 (2004)

Riess, T.; Andersson, S.; Lupas, A.; Schaller, M.; Schäfer, A.; Kyme, P.; Martin, J.; Wälzlein, J.-H.; Ehehalt, U.; Lindroos, H. et al.; Schirle, M.; Nordheim, A.; Autenrieth, I.; Kempf, V.: Bartonella adhesin a mediates a proangiogenic host cell response. Journal of Experimental Medicine 200 (10), pp. 1267 - 1278 (2004)

Santos, L.; Frickey, T.; Peters, J.; Baumeister, W.; Lupas, A.; Zwickl, P.: Thermoplasma acidophilum TAA43 is an archaeal member of the eukaryotic meiotic branch of AAA ATPases. Biological Chemistry 385 (11), pp. 1105 - 1111 (2004)

Martin, J.: Chaperonin function: effects of crowding and confinement. Journal of Molecular Recognition 17 (5), pp. 465 - 472 (2004)

Frickey, T.; Lupas, A.: PhyloGenie: automated phylome generation and analysis. Nucleic Acids Research (London) 32 (17), pp. 5231 - 5238 (2004)

Martin, J.; Gruber, M.; Lupas, A.: Coiled coils meet the chaperone world. Trends in biochemical sciences 29 (9), pp. 455 - 458 (2004)

Rabus, R.; Ruepp, A.; Frickey, T.; Rattei, T.; Fartmann, B.; Stark, M.; Bauer, M.; Zibat, A.; Lombardot, T.; Becker, I. et al.; Amann, J.; Gellner, K.; Teeling, H.; Leuschner, W.; Glöckner, F.; Lupas, A.; Amann, R.; Klenk, H.: The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments. Environmental Microbiology 6 (9), pp. 887 - 902 (2004)

Frickey, T.; Lupas, A.: Phylogenetic analysis of AAA proteins. Journal of Structural Biology 146 (1-2), pp. 2 - 10 (2004)

Srinivasan, J.; Otto, G.; Kahlow, U.; Geisler, R.; Sommer, R.: AppaDB: an AcedB database for the nematode satellite organism Pristionchus pacificus. Nucleic Acids Research (London) 32 (Database issue), pp. D421 - D422 (2004)

Söding, J.: Homology detection and 3D structure prediction by HMM-HMM comparison. In Sixth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP6), pp. 66 - 67. Sixth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP6), Gaeta, Italy, December 04, 2004 - December 08, 2004. (2004)

Söding, J.; Biegert, A.; Lupas, A.: HHpred web server for distant homology detection and structure prediction. In Sixth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP6), pp. 177 - 178. Sixth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP6), Gaeta, Italy, December 04, 2004 - December 08, 2004. (2004)

Riess, T.; Andersson, S.; Lupas, A.; Schaller, M.; Wälzlein, J.-H.; Ehehalt, U.; Lindroos, H.; Schirle, M.; Nordheim, A.; Autenrieth, I. et al.; Kempf, V.: Bartonella henselae adhesin A (BadA), a novel non-fimbrial adhesin mediating a proangiogenic host cell response. In International Journal of Medical Microbiology, 294 (Supplement 1), MEV001, p. 94. 56. Jahrestagung der Deutschen Gesellschaft fur Hygiene und Mikrobiologie (DGHM 2004) in Zusammenarbeit mit der Deutschen Veterinärmedizinischen Gesellschaft (DVG), Fachgruppe Bakteriologie und Mykologie, Münster, Germany, September 26, 2004 - September 29, 2004. Urban & Fischer, Jena, Germany (2004)

Soeding, J.; Lupas, A.: Homology Search By HMM-HMM Comparison Detects More Than Three Times As Many Remote Homologs as PSIBLAST or HMMER. In 1st Structural Bioinformatics Meeting at ISMB/ECCB2004, 41, pp. 21 - 22. 1st Structural Bioinformatics Meeting at ISMB/ECCB 2004, Glasgow, UK, July 29, 2004 - July 30, 2004. (2004)

Linke, D.: The evolution of the ẞ-barrel. Baeza Workshop W1: Origin and Evolution of Human Pathogens, Baeza, Spain (2004)

Karpenahalli, M.; Söding, J.; Lupas, A.: Evolution of Tetratrico Peptide Repeats. 12th Annual International Conference on Intelligent Systems for Molecular Biology & 3rd European Conference on Computational Biology (ISMB ECCB 2004), Glasgow, UK (2004)