Publications
^{_{Protein Evolution}}

Alexander, L.; Lepore, R.; Kryshtafovych, A.; Adamopoulos, A.; Alahuhta, M.; Arvin, A.; Bomble, Y.; Böttcher, B.; Breyton, C.; Chiarini, A. et al.; Chinnam, N.; Chiu, W.; Fidelis, K.; Grinter, R.; Gupta, G.; Hartmann, M.; Hayes, C.; Heidebrecht, T.; Ilari, A.; Joachimiak, A.; Kim, Y.; Linares, R.; Lovering, A.; Lunin, V.; Lupas, A.; Makbul, C.; Michalska, K.; Moult, J.; Mukherjee, P.; Nutt, W.; Oliver, S.; Perrakis, A.; Stols, L.; Tainer, J.; Topf, M.; Tsutakawa, S.; Valdivia-Delgado, M.; Schwede, T.: Target highlights in CASP14: Analysis of models by structure providers. Proteins: Structure, Function, and Genetics 89 (12), pp. 1647 - 1672 (2021)

Kryshtafovych, A.; Moult, J.; Albrecht, R.; Chang, G.; Cao, K.; Fraser, A.; Greenfield, J.; Hartmann, M.; Herzberg, O.; Joosts, I. et al.; Leiman, P.; Linden, S.; Lupas, A.; Nelson, D.; Rees, S.; Shang, X.; Sokolova, M.; Tidow, H.: Computational models in the service of X-ray and cryo-electron microscopy structure determination. Proteins: Structure, Function, and Bioinformatics 89 (12), pp. 1633 - 1646 (2021)

Maiwald, S.; Heim, C.; Hernandez Alvarez, B.; Hartmann, M.: Correction to "Sweet and Blind Spots in E3 Ligase Ligand Space Revealed by a Thermophoresis-Based Assay". ACS Medicinal Chemistry Letters 13 (1), pp. 148 - 149 (2021)

Millán, C.; Keegan, R.; Pereira, J.; Sammito, M.; Simpkin, A.; McCoy, A.; Lupas, A.; Hartmann, M.; Rigden, D.; Read, R.: Assessing the utility of CASP14 models for molecular replacement. Proteins: Structure, Function, and Bioinformatics 89 (12), pp. 1752 - 1769 (2021)

Pereira, J.; Simpkin, A.; Hartmann, M.; Rigden, D.; Keegan, R.; Lupas, A.: High-accuracy protein structure prediction in CASP14. Proteins: Structure, Function, and Bioinformatics 89 (12), pp. 1687 - 1699 (2021)

Selim, K.; Haffner, M.; Burkhardt, M.; Mantovani, O.; Neumann, N.; Albrecht, R.; Seifert, R.; Krüger, L.; Stülke, J.; Hartmann, M. et al.; Hagemann, M.; Forchhammer, K.: Diurnal metabolic control in cyanobacteria requires perception of second messenger signaling molecule c-di-AMP by the carbon control protein SbtB. Science Advances 7 (50), eabk0568 (2021)

Belyy, A.; Merino, F.; Mechold, U.; Raunser, S.: Mechanism of actin-dependent activation of nucleotidyl cyclase toxins from bacterial human pathogens. Nature Communications 12 (1), 6628 (2021)

Buchholz, P.; van Loo , B.; Eenink, B.; Bornberg-Bauer, E.: Ancestral sequences of a large promiscuous enzyme family correspond to bridges in sequence space in a network representation. Interface: Journal of the Royal Society 18 (184), 20210389 (2021)

von Kügelgen, A.; Alva, V.; Bharat, T.: Complete atomic structure of a native archaeal cell surface. Cell Reports 37 (8), 110052 (2021)

Masrati, G.; Landau, M.; Ben-Tal, R.; Lupas, A.; Kosloff, M.; Kosinski, J.: Integrative Structural Biology in the Era of Accurate Structure Prediction. Journal of Molecular Biology (London) 433 (20), 167127 (2021)

Funk, J.; Merino, F.; Schaks, M.; Rottner, K.; Raunser, S.; Bieling, P.: A barbed end interference mechanism reveals how capping protein promotes nucleation in branched actin networks. Nature Communications 12 (1), 5329 (2021)

Orthwein, T.; Huergo, L.; Forchhammer, K.; Selim, K.: Kinetic Analysis of a Protein-protein Complex to Determine its Dissociation Constant (K D) and the Effective Concentration (EC 50) of an Interplaying Effector Molecule Using Bio-layer Interferometry. Bio-protocol 11 (17), e4152 (2021)

Pereira, J.; Alva, V.: How do I get the most out of my protein sequence using bioinformatics tools? Acta Crystallographica Section D: Structural Biology 77 (9), pp. 1116 - 1126 (2021)

Rivard, E.; Ludwig, A.; Patel, P.; Grandchamp, A.; Arnold, S.; Berger, A.; Scott, E.; Kelly, B.; Mascha, G.; Bornberg-Bauer, E. et al.; Findlay, G.: A putative de novo evolved gene required for spermatid chromatin condensation in Drosophila melanogaster. PLoS Genetics 17 (9), e1009787 (2021)

Solan, R.; Pereira, J.; Lupas, A.; Kolodny, R.; Ben-Tal, N.: Gram-negative outer-membrane proteins with multiple β-barrel domains. Proceedings of the National Academy of Sciences of the United States of America 118 (31), e2104059118 (2021)

Fuchs, A.; Alva, V.; Lupas, A.: An astonishing wealth of new proteasome homologs. Bioinformatics 37 (24), pp. 4694 - 4703 (2021)

Ben-Tal, N.; Lupas, A.: Editorial overview: Sequences and topology: "paths from sequence to structure". Current Opinion in Structural Biology 68, pp. VI - VIII (2021)

ElGamacy, M.; Hernandez Alvarez, B.: Expanding the versatility of natural and de novo designed coiled coils and helical bundles. Current Opinion in Structural Biology 68, pp. 224 - 234 (2021)

Harrison, M.; Jaimes Niño, L.; Almeida Rodrigues, M.; Ryll, J.; Flatt, T.; Oettler, J.; Bornberg-Bauer, E.: Gene Coexpression Network Reveals Highly Conserved, Well-Regulated Anti-Ageing Mechanisms in Old Ant Queens. Genome Biology and Evolution 13 (6), evab093 (2021)

Bharat, T.; von Kügelgen, A.; Alva, V.: Molecular Logic of Prokaryotic Surface Layer Structures. Trends in Microbiology 29 (5), pp. 405 - 415 (2021)