Ruaud, A.; Pfister, N.; Ley, R.; Youngblut, N.: Enhancing the application of machine learning models to microbiome data with endoR. Cell Symposia: Infection Biology in the Age of the Microbiome, Paris, France (2023)

Moreno-Gallego, J.; Reyes, A.; Huson, D.; Ley, R.: An expanded diversity of transposable phages. Viruses of Microbes (VoM 2022), Guimarães, Portugal (2022)

Biehain, U.; Esquivel-Elizondo, S.; Sun, T.; Rohbohm, N.; Ley, R.; Angenent, L.: Enrichment and isolation of syntrophic hydrogen-producing microbes from the human gut. Annual Conference of the Association for General and Applied Microbiology (VAAM 2022) Digital, Düsseldorf/Jülich, Germany (2022)

Frick, C.; Gruber, L.; Zundel, F; Heaver, S.; Ley, R.: Spatial lipid profiling of the gut commensal B. thetaiotaomicron in the mouse gut. OurCon2021: The International Mass Spectrometry Imaging Conference, Sheffield, UK (2021)

de la Cuesta, J.; Youngblut, N.; Escobar, J.; Ley, R.: Obesity Is the Main Driver of Functional Alterations of the Gut Microbiome in Cardiometabolic Disease. World Microbe Forum 2021 (2021)

Ruaud, A.; Pfister, N.; Ley, R.; Youngblut, N.: Interpretation of Tree Ensemble Machine Learning Models with EndoR. World Microbe Forum 2021 (2021)

Schön, T.; Ley, R.; Waters, J.: The Gut Microbe Christensenella minuta Increases Host Activity. World Microbe Forum 2021 (2021)

Youngblut, N.; Reischer, G.; Dauser, S.; Walzer, C.; Stalder, G.; Farnleitner, A.; Ley, R.: Strong Influence of Vertebrate Host Phylogeny on Gut Archaeal Diversity. World Microbe Forum 2021 (2021)

Sutter, J.; Youngblut, N.; Walters, W.; Ley, R.: Comparative metagenomic analysis of highly abundant Pseudomonas within the maize rhizosphere. XVIII Congress of the International Society for Molecular Plant-Microbe Interactions (IS-MPMI 2019), Glasgow, UK (2019)

de la Cuesta-Zuluaga, J.; Ley, R.; Youngblut, N.: Struo: a pipeline for building custom databases for common metagenome profilers. German Conference on Bioinformatics (GCB 2019), Heidelberg, Germany (2019)

Heaver, S.; Ley, R.: A transcriptomic approach to identify the sphingolipid metabolic pathway in gut-associated Bacteroides. 13th Sphingolipid Club & 10th International Ceramide Conference, Cascais, Portugal (2019)

Wallace, J.; Kremling, K.; Walters, W.; Lepak, N.; Ley, R.; Buckler, E.: The effects of host and environment on the maize microbiome. 60th Annual Maize Genetics Conference, Saint-Malo, France (2018)

Bell, M.: Investigating the Structure-Function Relationships Between Flagellins and Toll-Like Receptor 5. Dissertation, Eberhard-Karls-Universität, Tübingen, Germany (2024)

Borbón-García, A.: Diversity and evolution of flagellins: insights from free-living and host-associated microbial environments with a focus on the human gut. Dissertation, Eberhard-Karls-Universität, Tübingen, Germany (2024)

Fitzstevens, J.: Human gut microbes’ transmission, persistence and contribution to lactose tolerance. Dissertation, 170 S., Eberhard-Karls-Universität, Tübingen, Germany (2024)

Schön, T.: Christensenella minuta has minor effects on gut microbiome composition but modulates host energy expenditure in mice. Dissertation, Eberhard-Karls-Universität, Tübingen, Germany (2023)

Moreono, L.: On bioinformatics of the human gut virome. Dissertation (2022)

de la Cuesta Zuluaga, J.: Insights Into the Human Gut Microbiome and its Link with Obesity and Cardiometabolic Diseases. Dissertation, 166 S., Eberhard-Karls-Universität, Tübingen, Germany (2022)

Ruaud, A.: Analysis of Human Gut Metagenomes for the Prediction of Host Traits with Tree Ensemble Machine Learning Models. Dissertation, 191 S., Eberhard-Karls-Universität, Tübingen, Germany (2021)

Ley, R.: To Which Extent Do Genetics Determine the Composition of the Gut Microbiome? (2017)