Publikationen
Zeitschriftenartikel (10)
1.
Zeitschriftenartikel
Uncovering gene-family founder events during major evolutionary transitions in animals, plants and fungi using GenEra. Genome Biology (angenommen)
2.
Zeitschriftenartikel
23 (1), 263 (2022)
Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation. Genome Biology 3.
Zeitschriftenartikel
602 (7895), S. 142 - 147 (2022)
Petabase-scale sequence alignment catalyses viral discovery. Nature 4.
Zeitschriftenartikel
8 (1), 241 (2021)
Grafting vigour is associated with DNA de-methylation in eggplant. Horticulture Research 5.
Zeitschriftenartikel
49 (14), e83 (2021)
noisyR: enhancing biological signal in sequencing datasets by characterizing random technical noise. Nucleic Acids Research 6.
Zeitschriftenartikel
18 (4), S. 366 - 368 (2021)
Sensitive protein alignments at tree-of-life scale using DIAMOND. Nature methods 7.
Zeitschriftenartikel
11, 606800 (2021)
How Stress Facilitates Phenotypic Innovation Through Epigenetic Diversity. Frontiers in Plant Science 8.
Zeitschriftenartikel
5 (50), 2170 (2020)
LTRpred: de novo annotation of intact retrotransposons. The Journal of Open Source Software 9.
Zeitschriftenartikel
102 (2), S. 222 - 229 (2020)
The Earth BioGenome project: opportunities and challenges for plant genomics and conservation. The Plant Journal 10.
Zeitschriftenartikel
11 (12), S. 3382 - 3392 (2019)
Becoming a Selfish Clan: Recombination Associated to Reverse-Transcription in LTR Retrotransposons. Genome Biology and Evolution Buchkapitel (1)
11.
Buchkapitel
2250. Springer, US (2021)
A Predictive Approach to Infer the Activity and Natural Variation of Retrotransposon Families in Plants. In: Methods in Molecular Biology, Bd. Vortrag (2)
12.
Vortrag
Diamond. Future Opportunities for Software in Research 2022, Plön, Germany (2022)
13.
Vortrag
Sensitive tree-of-life scale protein alignment using DIAMOND. Brazilian Webinars on Bioinformatics (2021)
Hochschulschrift - Master (1)
14.
Hochschulschrift - Master
Harnessing Protein Language Models to improve classic Local Pairwise Alignments for more sensitive and scalable Deep Homology Detection. Master, Ebherhard-Karls-Universität, Tübingen, Germany (2022)
Preprint (2)
15.
Preprint
Sensitive clustering of protein sequences at tree-of-life scale using DIAMOND DeepClust. (eingereicht)
16.
Preprint
Sensitive inference of alignment-safe intervals from biodiverse protein sequence clusters using EMERALD. (eingereicht)