Publikationen
_{^{Protein Bioinformatik}}

von Kügelgen, A.; van Dorst, S.; Alva, V.; Bharat, T.: A multidomain connector links the outer membrane and cell wall in phylogenetically deep-branching bacteria. Proceedings of the National Academy of Sciences of the United States of America 119 (33), e2203156119 (2022)

Elhabashy, H.; Merino, F.; Alva, V.; Kohlbacher, O.; Lupas, A.: Exploring protein-protein interactions at the proteome level. Structure 30 (4), S. 462 - 475 (2022)

von Kügelgen, A.; Alva, V.; Bharat, T.: Complete atomic structure of a native archaeal cell surface. Cell Reports 37 (8), 110052 (2021)

Pereira, J.; Alva, V.: How do I get the most out of my protein sequence using bioinformatics tools? Acta Crystallographica Section D: Structural Biology 77 (9), S. 1116 - 1126 (2021)

Fuchs, A.; Alva, V.; Lupas, A.: An astonishing wealth of new proteasome homologs. Bioinformatics 37 (24), S. 4694 - 4703 (2021)

Bharat, T.; von Kügelgen, A.; Alva, V.: Molecular Logic of Prokaryotic Surface Layer Structures. Trends in Microbiology 29 (5), S. 405 - 415 (2021)

Lupas, A.; Pereira, J.; Alva, V.; Merino, F.; Coles, M.; Hartmann, M.: The breakthrough in protein structure prediction. Biochemical Journal 478 (10), S. 1885 - 1890 (2021)

Selim, K.; Tremiño, L.; Marco-Marín, C.; Alva, V.; Espinosa, J.; Contreras, A.; Hartmann, M.; Forchhammer, K.; Rubio, V.: Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role. The FEBS Journal 288 (4), S. 1142 - 1162 (2021)

Gabler, F.; Nam, S.-Z.; Till, S.; Mirdita, M.; Steinegger, M.; Söding, J.; Lupas, A.; Alva, V.: Protein sequence analysis using the MPI Bioinformatics Toolkit. Current Protocols in Bioinformatics 72 (1), e108 (2020)

Seefelder, M.; Alva, V.; Huang, B.; Engler, T.; Baumeister, W.; Guo, Q.; Fernandez-Busnadiego, R.; Lupas, A.; Kochanek, S.: The evolution of the huntingtin-associated protein 40 (HAP40) in conjunction with huntingtin. BMC Evolutionary Biology 20 (1), 162 (2020)

Narunsky, A.; Kessel, A.; Solan, R.; Alva, V.; Kolodny, R.; Ben-Tal, N.: On the evolution of protein-adenine binding. Proceedings of the National Academy of Sciences of the United States of America 117 (9), S. 4701 - 4709 (2020)

Lauer, J.; Segeletz, S.; Cezanne, A.; Guaitoli, G.; Raimondi, F.; Gentzel, M.; Alva, V.; Habeck, M.; Kalaidzidis, Y.; Ueffing, M. et al.; Lupas, A.; Gloeckner, C.; Zerial, M.: Auto-regulation of Rab5 GEF activity in Rabex5 by allosteric structural changes, catalytic core dynamics and ubiquitin binding. eLife 8, e46302 (2019)

Afanasieva, E.; Chaudhuri, I.; Martin, J.; Hertle, E.; Ursinus, A.; Alva, V.; Hartmann, M.; Lupas, A.: Structural diversity of oligomeric β-propellers with different numbers of identical blades. eLife 8, e49853 (2019)

Brault, M.; Petit, J.; Immel, F.; Nicolas, W.; Glavier, M.; Brocard, L.; Gaston, A.; Fouché, M.; Hawkins, T.; Crowet, J.-M. et al.; Grison, M.; Germain, V.; Rocher, M.; Kraner, M.; Alva, V.; Claverol, S.; Paterlini, A.; Helariutta, Y.; Deleu, M.; Lins, L.; Tilsner, J.; Bayer, E.: Multiple C2 domains and transmembrane region proteins (MCTPs) tether membranes at plasmodesmata. EMBO Reports 20 (8), e47182 (2019)

Ludwiczak, J.; Winski, A.; Szczepaniak , A.; Alva, V.; Dunin-Horkawicz, S.: DeepCoil-a fast and accurate prediction of coiled-coil domains in protein sequences. Bioinformatics 35 (16), S. 2790 - 2795 (2019)

Alva, V.; Lupas, A.: Histones Predate the Split Between Bacteria and Archaea. Bioinformatics 35 (14), S. 2349 - 2353 (2019)

Ludwiczak, J.; Winski, A.; Marinho da Silva Neto, A.; Szczepaniak, K.; Alva, V.; Dunin-Horkawicz, S.: PiPred: a deep-learning method for prediction of π-helices in protein sequences. Scientific Reports 9, 6888 (2019)

Zimmermann, L.; Stephens, A.; Nam, S.-Z.; Rau, D.; Kübler, J.; Lozajic, M.; Gabler, F.; Söding, J.; Lupas, A.; Alva, V.: A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core. Journal of Molecular Biology 430 (15), S. 2237 - 2243 (2018)

Alvarez-Carreño, C.; Alva, V.; Becerra, A.; Lazcano, A.: Structure, function and evolution of the hemerythrin-like domain superfamily. Protein Science 27 (4), S. 848 - 860 (2018)

Sgromo, A.; Raisch, T.; Backhaus, C.; Keskeny, C.; Alva, V.; Weichenrieder, O.; Izaurralde, E.: Drosophila Bag-of-marbles directly interacts with the CAF40 subunit of the CCR4-NOT complex to elicit repression of mRNA targets. RNA-A Publication of the RNA Society 24 (3), S. 381 - 395 (2018)