Hüther, P.; Hagmann, J.; Nunn, A.; Kakoulidou, I.; Pisupati, R.; Langenberger, D.; Weigel, D.; Johannes, F.; Schultheiss, S.; Becker, C.: MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data. Quantitative Plant Biology 3, e19 (2022)

Zacharaki, V.; Ponnu, J.; Crepin, N.; Langenecker, T.; Hagmann, J.; Skorzinski, N.; Musialak-Lange, M.; Wahl, V.; Rolland, F.; Schmid, M.: Impaired KIN10 function restores developmental defects in the Arabidopsis trehalose 6-phosphate synthase1 (tps1) mutant. New Phytologist 235 (1), S. 220 - 233 (2022)

Zozaya, S.; Teasdale, L.; Moritz, C.; Higgie, M.; Hoskin, C.: Composition of a chemical signalling trait varies with phylogeny and precipitation across an Australian lizard radiation. Journal of Evolutionary Biology 35 (7), S. 919 - 933 (2022)

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Shalev, O.; Ashkenazy, H.; Neumann, M.; Weigel, D.: Commensal Pseudomonas protect Arabidopsis thaliana from a coexisting pathogen via multiple lineage-dependent mechanisms. The ISME Journal 16 (5), S. 1235 - 1244 (2022)

Shalev, O.; Karasov, T.; Lundberg, D.; Ashkenazy, H.; Ayutthaya, P.; Weigel, D.: Commensal Pseudomonas strains facilitate protective response against pathogens in the host plant. Nature Ecology & Evolution 6 (4), S. 383 - 396 (2022)

van der Zee, M.; Whiting, J.; Paris, J.; Bassar, J.; Travis, J.; Weigel, D.; Reznick, D.; Fraser, B.: Rapid genomic convergent evolution in experimental populations of Trinidadian guppies ( Poecilia reticulata). Evolution Letters 6 (2), S. 149 - 161 (2022)

Fan, L.; Fröhlich, K.; Melzer, E.; Pruitt, R.; Albert, I.; Zhang, L.; Joe, A.; Hua, C.; Song, Y.; Albert, M. et al.; Kim, S.-T.; Weigel, D.; Zipfel, C.; Chae, E.; Gust, A.; Nürnberger, T.: Genotyping-by-sequencing-based identification of Arabidopsis pattern recognition receptor RLP32 recognizing proteobacterial translation initiation factor IF1. Nature Communications 13 (1), 1294 (2022)

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Kreiner, J.; Sandler, G.; Stern, A.; Tranel, P.; Weigel, D.; Stinchcombe, J.; Wright, S.: Repeated origins, widespread gene flow, and allelic interactions of target-site herbicide resistance mutations. eLife 11, e70242 (2022)

Shirsekar, G.; Devos, J.; Latorre, S.; Blaha, A.; Queiroz Dias, M.; González Hernando, A.; Lundberg, D.; Burbano, H.; Fenster, C.; Weigel, D.: Multiple Sources of Introduction of North American Arabidopsis thaliana from across Eurasia. Molecular Biology and Evolution 38 (12), S. 5328 - 5344 (2021)

Tello, J.; Royo, C.; Baroja, E.; García-Escudero, E.; Martínez-Zapater, J.; Carbonell-Bejerano, P.: Reduced gamete viability associated to somatic genome rearrangements increases fruit set sensitivity to the environment in Tempranillo Blanco grapevine cultivar. Scientia Horticulturae 290, 110497 (2021)

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Kreiner, J.; Tranel, P.; Weigel, D.; Stinchcombe, J.; Wright, S.: The genetic architecture and population genomic signatures of glyphosate resistance in Amaranthus tuberculatus. Molecular Ecology 30 (21), S. 5373 - 5389 (2021)

Pruitt, R.; Locci, F.; Wanke, F.; Zhang, L.; Saile, S.; Joe, A.; Karelina, D.; Hua, C.; Fröhlich, K.; Wan, W.-L. et al.; Hu, M.; Rao, S.; Stolze, S.; Harzen, A.; Gust, A.; Harter, K.; Joosten, M.; Thomma, B.; Zhou, J.-M.; Dangl, J.; Weigel, D.; Nakagami, H.; Oecking, C.; Kasmi, F.; Parker, J.; Nürnberger, T.: The EDS1–PAD4–ADR1 node mediates Arabidopsis pattern-triggered immunity. Nature 598 (7881), S. 495 - 499 (2021)

Sims, J.; Rabanal, F.; Elgert, C.; von Haeseler, A.; Schlögelhofer, P.: It Is Just a Matter of Time: Balancing Homologous Recombination and Non-homologous End Joining at the rDNA Locus During Meiosis. Frontiers in Plant Science 12, 773052 (2021)

Vogt, F.; Shirsekar, G.; Weigel, D.: vcf2gwas: python API for comprehensive GWAS analysis using GEMMA. Bioinformatics 38 (3), S. 839 - 840 (2021)

Lei, L.; Weigel, D.: One Hundred Years of Hybrid Necrosis: Hybrid Autoimmunity as a Window into the Mechanisms and Evolution of Plant-Pathogen Interactions. Annual Review of Phytopathology 59, S. 213 - 237 (2021)

Moutsopoulos, I.; Maischak, L.; Lauzikaite, E.; Vasquez Urbina, S.; Williams, E.; Drost, H.-G.; Mohorianu, I.: noisyR: enhancing biological signal in sequencing datasets by characterizing random technical noise. Nucleic Acids Research 49 (14), e83 (2021)