Weigel, D.; Mott, R.: The 1001 genomes project for Arabidopsis thaliana. Genome Biology 10 (5), 107 (2009)

Molnar, A.; Bassett, A.; Thuenemann, E.; Schwach, F.; Karkare, S.; Ossowski, S.; Weigel, D.; Baulcombe, D.: Highly specific gene silencing by artificial microRNAs in the unicellular alga Chlamydomonas reinhardtii. The Plant Journal 58 (1), S. 165 - 174 (2009)

Felippes, F.; Weigel, D.: Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173. EMBO Reports 10 (3), S. 264 - 270 (2009)

Guo, Y.-L.; Bechsgaard, J.; Slotte, T.; Neuffer, B.; Lascoux, M.; Weigel, D.; Schierup, M.: Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck. Proceedings of the National Academy of Sciences of the United States of America 106 (13), S. 5246 - 5251 (2009)

Stöbe, P.; Stein, S.; Habring-Müller, A.; Bezdan, D.; Fuchs, A.; Hueber, S.; Wu, H.; Lohmann, I.: Multifactorial regulation of a hox target gene. PLoS Genetics 5 (3), e1000412 (2009)

Weigel, D.; Glazebrook, J.: Dellaporta miniprep for plant DNA isolation. Cold Spring Harbor protocols 4 (3), pdb.prot5178 (2009)

Weigel, D.; Glazebrook, J.: Quick miniprep for plant DNA isolation. Cold Spring Harbor protocols 4 (3), pdb.prot5179 (2009)

Balasubramanian, S.; Schwartz, C.; Singh, A.; Warthmann, N.; Kim, M.; Maloof, J.; Loudet, O.; Trainer, G.; Dabi, T.; Borevitz, J. et al.; Chory, J.; Weigel, D.: QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. PLoS One 4 (2), e4318 (2009)

Plantegenet, S.; Weber, S.; Goldstein, D.; Zeller, G.; Nussbaumer, C.; Thomas, J.; Weigel, D.; Harshman, K.; Hardtke, C.: Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance. Molecular Systems Biology 5, 242 (2009)

Sureshkumar, S.; Todesco, M.; Schneeberger, K.; Harilal, R.; Balasubramaniam, S.; Weigel, D.: A genetic defect caused by a triplet repeat expansion in Arabidopsis thaliana. Science 323 (5917), S. 1060 - 1063 (2009)

Fulton, L.; Batoux, M.; Vaddepalli, P.; Yadav, R.; Busch, W.; Andersen, S.; Jeong, S.; Lohmann, J.; Schneitz, K.: DETORQUEO, QUIRKY, and ZERZAUST represent novel components involved in organ development mediated by the receptor-like kinase STRUBBELIG in Arabidopsis thaliana. PLoS Genetics 5 (1), e1000355 (2009)

Kumar, M.; Busch, W.; Birke, H.; Kemmerling, B.; Nürnberger, T.; Schöffl, F.: Heat shock factors HsfB1 and HsfB2b are involved in the regulation of Pdf1.2 expression and pathogen resistance in Arabidopsis. Molecular Plant 2 (1), S. 152 - 165 (2009)

Naouar, N.; Vandepoele, K.; Lammens, T.; Casneuf, T.; Zeller, G.; van Hummelen, P.; Weigel, D.; Rätsch, G.; Inzé, D.; Kuiper, M. et al.; De Veylder, L.; Vuylsteke, M.: Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target. The Plant Journal 57 (1), S. 184 - 194 (2009)

Naouar, N.; Vandepoele, K.; Lammens, T.; Casneuf, T.; Zeller, G.; van Hummelen, P.; Weigel, D.; Rätsch, G.; Inzé, D.; Kuiper, N. et al.; De Veylder, L.; Vuylsteke, M.: Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes. The Plant Journal 57 (1), S. 184 - 194 (2009)

Rattray, M.; Stegle, O.; Sharp, K.; Winn, J.: Inference algorithms and learning theory for Bayesian sparse factor analysis. International Workshop on Statistical-Mechanical Informatics 2009 (IW-SMI 2009), Kyoto, Japan, 13. September 2009 - 16. September 2009. Journal of Physics: Conference Series 197 (1), 012002, (2009)

Stegle, O.; Denby, K.; Wild, D.; McHattie, S.; Mead, A.; Ghahramani, Z.; Borgwardt, K.: Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series. In: German Conference on Bioinformatics 2009 (GCB 2009), S. 133 - 142 (Hg. Grosse, I.; Neumann, S.; Posch, S.; Schreiber, F.; Stadler, P.). German Conference on Bioinformatics 2009 (GCB 2009), Halle, Germany, 28. September 2009 - 30. September 2009. Gesellschaft für Informatik, Bonn, Germany (2009)

Kondor, R.; Shervashidze, N.; Borgwardt, K.: The graphlet spectrum. In: ICML '09: Proceedings of the 26th Annual International Conference on Machine Learning, S. 529 - 536 (Hg. Danyluk, A.; Bottou, L.; Littman, M.). 26th International Conference on Machine Learning (ICML 2009), Montreal, Canada, 14. Juni 2009 - 18. Juni 2009. ACM Press, New York, NY, USA (2009)

Stegle, O.; Denby, K.; Wild, D.; Ghahramani, Z.; Borgwardt, K.: A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. In: Research in Computational Molecular Biology: 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009, S. 201 - 216 (Hg. Batzoglou, S.). 13th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2009), Tucson, AZ, USA, 18. Mai 2009 - 21. Mai 2009. Springer, Berlin, Germany (2009)

Lippert, C.; Stegle, O.; Ghahramani, Z.; Borgwardt, K.: A kernel method for unsupervised structured network inference. In: Twelfth International Conference on Artificial Intelligence and Statistics (AIStats 2009), S. 368 - 375 (Hg. Van Dyk, D.; Welling, M.). Twelfth International Conference on Artificial Intelligence and Statistics (AIStats 2009), Clearwater Beach, FL, USA, 16. April 2009 - 18. April 2009. MIT Press, Cambridge, MA, USA (2009)

Schultheiss, S.; Busch, W.; Lohmann, J.; Kohlbacher, O.; Rätsch, G.: KIRMES: kernel-based identification of regulatory modules in euchromatic sequences. In BMC Bioinformatics, 10 (Supplement 13), O1. 5th International Society for Computational Biology Student Council (ISCB 2009) at the Symposium at the 17th Annual International Conference on Intelligent Systems for Molecular Biology and the 8th European Conference on Computational Biology, Stockholm, Sweden, 27. Juni 2009. BioMed Central (2009)