Kreiner, J.; Sandler, G.; Stern, A.; Tranel, P.; Weigel, D.; Stinchcombe, J.; Wright, S.: Repeated origins, widespread gene flow, and allelic interactions of target-site herbicide resistance mutations. eLife 11, e70242 (2022)

Shirsekar, G.; Devos, J.; Latorre, S.; Blaha, A.; Queiroz Dias, M.; González Hernando, A.; Lundberg, D.; Burbano, H.; Fenster, C.; Weigel, D.: Multiple Sources of Introduction of North American Arabidopsis thaliana from across Eurasia. Molecular Biology and Evolution 38 (12), pp. 5328 - 5344 (2021)

Tello, J.; Royo, C.; Baroja, E.; García-Escudero, E.; Martínez-Zapater, J.; Carbonell-Bejerano, P.: Reduced gamete viability associated to somatic genome rearrangements increases fruit set sensitivity to the environment in Tempranillo Blanco grapevine cultivar. Scientia Horticulturae 290, 110497 (2021)

Cerruti, E.; Gisbert, C.; Drost, H.-G.; Valentino, D.; Valentino, D.; Portis, E.; Barchi, L.; Prohens, J.; Lanteri, S.; Comino, C. et al.; Catoni, M.: Grafting vigour is associated with DNA de-methylation in eggplant. Horticulture Research 8 (1), 241 (2021)

Kreiner, J.; Tranel, P.; Weigel, D.; Stinchcombe, J.; Wright, S.: The genetic architecture and population genomic signatures of glyphosate resistance in Amaranthus tuberculatus. Molecular Ecology 30 (21), pp. 5373 - 5389 (2021)

Pruitt, R.; Locci, F.; Wanke, F.; Zhang, L.; Saile, S.; Joe, A.; Karelina, D.; Hua, C.; Fröhlich, K.; Wan, W.-L. et al.; Hu, M.; Rao, S.; Stolze, S.; Harzen, A.; Gust, A.; Harter, K.; Joosten, M.; Thomma, B.; Zhou, J.-M.; Dangl, J.; Weigel, D.; Nakagami, H.; Oecking, C.; Kasmi, F.; Parker, J.; Nürnberger, T.: The EDS1–PAD4–ADR1 node mediates Arabidopsis pattern-triggered immunity. Nature 598 (7881), pp. 495 - 499 (2021)

Sims, J.; Rabanal, F.; Elgert, C.; von Haeseler, A.; Schlögelhofer, P.: It Is Just a Matter of Time: Balancing Homologous Recombination and Non-homologous End Joining at the rDNA Locus During Meiosis. Frontiers in Plant Science 12, 773052 (2021)

Vogt, F.; Shirsekar, G.; Weigel, D.: vcf2gwas: python API for comprehensive GWAS analysis using GEMMA. Bioinformatics 38 (3), pp. 839 - 840 (2021)

Lei, L.; Weigel, D.: One Hundred Years of Hybrid Necrosis: Hybrid Autoimmunity as a Window into the Mechanisms and Evolution of Plant-Pathogen Interactions. Annual Review of Phytopathology 59, pp. 213 - 237 (2021)

Moutsopoulos, I.; Maischak, L.; Lauzikaite, E.; Vasquez Urbina, S.; Williams, E.; Drost, H.-G.; Mohorianu, I.: noisyR: enhancing biological signal in sequencing datasets by characterizing random technical noise. Nucleic Acids Research 49 (14), e83 (2021)

Srikant, T.; Wibowo, A.: The Underlying Nature of Epigenetic Variation: Origin, Establishment, and Regulatory Function of Plant Epialleles. International Journal of Molecular Sciences 22 (16), 8618 (2021)

Bernhofer, M.; Dallago, C.; Karl, T.; Satagopam, V.; Heinzinger, M.; Littmann, M.; Olenyi, T.; Qiu, J.; Schütze, K.; Yachdav, G. et al.; Ashkenazy, H.; Ben-Tal, N.; Bromberg, Y.; Goldberg, T.; Kajan, L.; O'Donoghue, S.; Sander, C.; Schafferhans, A.; Schlessinger, A.; Vriend, G.; Mirdita, M.; Gawron, P.; Gu, W.; Jarosz, Y.; Trefois, C.; Steinegger, M.; Schneider, R.; Rost, R.: PredictProtein: Predicting Protein Structure and Function for 29 Years. Nucleic Acids Research 49 (W1), pp. W535 - W540 (2021)

Lundberg, D.; Ayutthaya, P.; Strauß, A.; Shirsekar, G.; Lo, W.-S.; Lahaye, T.; Weigel, D.: Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition. eLife 10, e66186 (2021)

Milani, A.; Lutz, U.; Galla, G.; Scarabel, L.; Weigel, D.; Sattin, M.: Population structure and evolution of resistance to acetolactate synthase (ALS)-inhibitors in Amaranthus tuberculatus in Italy. Pest Management Science 77 (6), pp. 2971 - 2980 (2021)

Barragan, A.; Weigel, D.: Plant NLR diversity: the known unknowns of pan-NLRomes. Plant Cell 33 (4), pp. 814 - 831 (2021)

Katz, E.; Li, J.-J.; Jaegle, B.; Ashkenazy, H.; Abrahams, S.; Bagaza, C.; Holden, S.; Pires, C.; Angelovici, R.; Kliebenstein, D.: Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe. eLife 10, e67784 (2021)

Whiting, J.; Paris, J.; van der Zee, M.; Parsons, P.; Weigel, D.; Fraser, B.: Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies. PLoS Genetics 17 (5), e1009566 (2021)

Zinelabidine, L.; Torres-Pérez, R.; Grimplet, J.; Baroja, E.; Ibáñez, S.; Carbonell-Bejerano, P.; Martínez-Zapater, J.; Ibáñez, J.; Tello, J.: Genetic variation and association analyses identify genes linked to fruit set-related traits in grapevine. Plant Science 306, 110875 (2021)

Buchfink, B.; Reuter, K.; Drost, H.-G.: Sensitive protein alignments at tree-of-life scale using DIAMOND. Nature methods 18 (4), pp. 366 - 368 (2021)

Calderón, L.; Mauri, N.; Muñoz, C.; Carbonell-Bejerano, P.; Bree, L.; Bergamin, D.; Sola, C.; Gomez-Talquenca, S.; Royo, C.; Ibáñez, J. et al.; Martínez-Zapater, J.; Lijavetzky, D.: Whole genome resequencing and custom genotyping unveil clonal lineages in 'Malbec' grapevines (Vitis vinifera L.). Scientific Reports 11 (1), 7775 (2021)