Publikationen
Ciliaten-Genomik und Molekularbiologie

Zeitschriftenartikel (14)

1.
Zeitschriftenartikel
Seah, B.; Swart, E.: When cleaning facilitates cluttering: genome editing in ciliates. Trends in Genetics 39 (5), S. 344 - 346 (2023)
2.
Zeitschriftenartikel
Seah, B.; Singh, M.; Emmerich, C.; Singh, A.; Woehle, C.; Huettel, B.; Byerly, A.; Stover, N.; Sugiura, M.; Harumoto, T. et al.; Swart, E.: MITE infestation accommodated by genome editing in the germline genome of the ciliate Blepharisma. Proceedings of the National Academy of Sciences of the United States of America 120 (4), e2213985120 (2023)
3.
Zeitschriftenartikel
Singh, M.; Seah, B.; Emmerich, C.; Singh, A.; Woehle, C.; Huettel, B.; Byerly, A.; Stover, N.; Sugiura, M.; Harumoto, T. et al.; Swart, E.: Origins of genome-editing excisases as illuminated by the somatic genome of the ciliate Blepharisma. Proceedings of the National Academy of Sciences of the United States of America 120 (4), e2213887120 (2023)
4.
Zeitschriftenartikel
Singh, A.; Maurer-Alcalá, X.; Solberg, T.; Haeussermann, L.; Gisler, S.; Ignarski , M.; Swart, E.; Nowacki, M.: Chromatin remodeling is required for sRNA-guided DNA elimination in Paramecium. EMBO Journal 41 (22), e111839 (2022)
5.
Zeitschriftenartikel
Seah, B.; Emmerich, C.; Singh, A.; Swart, E.: Improved methods for bulk cultivation and fixation of Loxodes ciliates for fluorescence microscopy. Protist 173 (5), 125905 (2022)
6.
Zeitschriftenartikel
Seah, B.; Singh, A.; Swart, E.: Karyorelict ciliates use an ambiguous genetic code with context-dependent stop/sense codons. Peer Community Journal 2, e42 (2022)
7.
Zeitschriftenartikel
Rzeszutek, I.; Swart, E.; Pabian-Jewuła, S.; Russo, A.; Nowacki, M.: Early developmental, meiosis-specific proteins - Spo11, Msh4-1, and Msh5 - Affect subsequent genome reorganization in Paramecium tetraurelia. Biochimica et Biophysica Acta: Molecular Cell Research 1869 (6), 119239 (2022)
8.
Zeitschriftenartikel
Seah, B.; Swart, E.: BleTIES: Annotation of natural genome editing in ciliates using long read sequencing. Bioinformatics 37 (21), btab613, S. 3929 - 3931 (2021)
9.
Zeitschriftenartikel
Mozzicafreddo, M.; Pucciarelli, S.; Swart, E.; Piersanti, A.; Emmerich, C.; Migliorelli, G.; Ballarini, P.; Miceli, C.: The macronuclear genome of the Antarctic psychrophilic marine ciliate Euplotes focardii reveals new insights on molecular cold adaptation. Scientific Reports 11 (1), 18782 (2021)
10.
Zeitschriftenartikel
Sayavedra, L.; Li, T.; Bueno Batista, M.; Seah, B.; Booth, C.; Zhai, Q.; Chen, W.; Narbad, A.: Desulfovibrio diazotrophicus sp. nov., a sulfate-reducing bacterium from the human gut capable of nitrogen fixation. Environmental Microbiology 23 (6), S. 3164 - 3181 (2021)
11.
Zeitschriftenartikel
Rzeszutek, I.; Singh, A.: Small RNAs, Big Diseases. International Journal of Molecular Sciences 21 (16), 5699 (2020)
12.
Zeitschriftenartikel
Faktorová, D.; Nisbet, R.; Fernández Robledo , J.; Casacuberta, E.; Sudek, L.; Allen, A.; Ares, M.; Balestreri, C.; Barbrook, A.; Beardslee, P. et al.; Bender, S.; Booth, D.; Bouget, Y.-F.; Bowler, C.; Breglia, S.; Brownlee, C.; Burger, G.; Cerutti, H.; Cesaroni, R.; Chiurillo, M.; Clemente, T.; Coles, D.; Collier, J.; Cooney, E.; Coyne, K.; Docampo, R.; Dupont, C.; Edgcomb, V.; Einarsson, E.; Elustondo, P.; Federici, F.; Freire-Beneitez, V.; Freyria, N.; Fukuda, K.; García, P.; Girguis, P.; Gomaa, R.; Gornik, S.; Guo, J.; Hampl, V.; Hanawa, Y.; Haro-Contreras, E.; Hehenberger, E.; Highfield, A.; Hirakawa, Y.; Hopes, A.; Howe, C.; Hu, I.; Ibañez, J.; Irwin, N.; Ishii, Y.; Janowicz, N.; Jones, A.; Kachele, A.; Fujimura-Kamada, K.; Kaur, B.; Kaye, J.; Kazana, A.; Keeling, P.; King, N.; Klobutcher, L.; Lander, N.; Lassadi, I.; Li, Z.; Lin, S.; Lozano, J.-C.; Luan, F.; Maruyama, S.; Matute, T.; Miceli, C.; Minagawa, J.; Moosburner, M.; Najle, S.; Nanjappa, D.; Nimmo, I.; Noble, L.; Novák Vanclová, A.; Nowacki, M.; Nuñez, I.; Pain, A.; Piersanti, A.; Pucciarelli, S.; Pyrih, J.; Rest, J.; Rius, M.; Robertson, D.; Ruaud, A.; Ruiz-Trillo, I.; Sigg, M.; Silver, P.; Slamovits, C.; Smith, G.; Sprecher, B.; Stern, R.; Swart, E.; Tsaousis, A.; Tsypin, L.; Turkewitz, A.; Turnšek, J.; Valach, M.; Vergé, V.; von Dassow, P.; von der Haar, T.; Waller, R.; Wang, L.; Wen, X.; Wheeler, G.; Woods, A.; Zhang, H.; Mock, T.; Worden, A.; Lukeš, J.: Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods 17 (5), 551 (2020)
13.
Zeitschriftenartikel
Faktorová, D.; Nisbet, R.; Fernández Robledo , J.; Casacuberta, E.; Sudek, L.; Allen, A.; Ares, M.; Balestreri, C.; Barbrook, A.; Beardslee, P. et al.; Bender, S.; Booth, D.; Bouget, Y.-F.; Bowler, C.; Breglia, S.; Brownlee, C.; Burger, G.; Cerutti, H.; Cesaroni, R.; Chiurillo, M.; Clemente, T.; Coles, D.; Collier, J.; Cooney, E.; Coyne, K.; Docampo, R.; Dupont, C.; Edgcomb, V.; Einarsson, E.; Elustondo, P.; Federici, F.; Freire-Beneitez, V.; Freyria, N.; Fukuda, K.; García, P.; Girguis, P.; Gomaa, R.; Gornik, S.; Guo, J.; Hampl, V.; Hanawa, Y.; Haro-Contreras, E.; Hehenberger, E.; Highfield, A.; Hirakawa, Y.; Hopes, A.; Howe, C.; Hu, I.; Ibañez, J.; Irwin, N.; Ishii, Y.; Janowicz, N.; Jones, A.; Kachele, A.; Fujimura-Kamada, K.; Kaur, B.; Kaye, J.; Kazana, A.; Keeling, P.; King, N.; Klobutcher, L.; Lander, N.; Lassadi, I.; Li, Z.; Lin, S.; Lozano, J.-C.; Luan, F.; Maruyama, S.; Matute, T.; Miceli, C.; Minagawa, J.; Moosburner, M.; Najle, S.; Nanjappa, D.; Nimmo, I.; Noble, L.; Novák Vanclová, A.; Nowacki, M.; Nuñez, I.; Pain, A.; Piersanti, A.; Pucciarelli, S.; Pyrih, J.; Rest, J.; Rius, M.; Robertson, D.; Ruaud, A.; Ruiz-Trillo, I.; Sigg, M.; Silver, P.; Slamovits, C.; Smith, G.; Sprecher, B.; Stern, R.; Swart, E.; Tsaousis, A.; Tsypin, L.; Turkewitz, A.; Turnšek, J.; Valach, M.; Vergé, V.; von Dassow, P.; von der Haar, T.; Waller, R.; Wang, L.; Wen, X.; Wheeler, G.; Woods, A.; Zhang, H.; Mock, T.; Worden, A.; Lukeš, J.: Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods 17 (5), S. 481 - 494 (2020)
14.
Zeitschriftenartikel
Lazzaretti, D.; Bandholz-Cajamarca, L.; Emmerich, C.; Schaaf, K.; Basquin, C.; Irion, U.; Bono, F.: The crystal structure of Staufen1 in complex with a physiological RNA sheds light on substrate selectivity. Life science alliance 1 (5), e201800187 (2018)

Meeting Abstract (4)

15.
Meeting Abstract
Shaikhutdinov, N.; Seah, B.; Emmerich, C.; Moeller, H.; Paight, C.; Johnson, M.; Swart, E.: Absence of spliceosomal introns in the mixotrophic ciliate Mesodinium rubrum: how did they disappear? In SMBE 2023, S. 443. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, 23. Juli 2023 - 27. Juli 2023. (2023)
16.
Meeting Abstract
Seah, B.; Singh, A.; Vetter, D.; Emmerich, C.; Peters, M.; Soltys, V.; Huettel, B.; Swart, E.: Evidence for ciliates without extensive DNA elimination: the karyorelict Loxodes magnus. In The 41st Annual Meeting of the DGP, S. 25. The 41st Annual Meeting of the German Society for Protozoology (DGP 2022), Bergisch Gladbach, Germany, 12. Juli 2022 - 15. Juli 2022. (2022)
17.
Meeting Abstract
Singh, M.; Seah, B.; Emmerich, C.; Singh, A.; Woehle, C.; Huettel, B.; Byerly, A.; Sover, N.; Sugiura, M.; Harumoto, C. et al.; Swart, E.: Genome editing excisase origins illuminated by somatic genome of the ciliate Blepharisma. In The 41st Annual Meeting of the DGP, S. 26. The 41st Annual Meeting of the German Society for Protozoology (DGP 2022), Bergisch Gladbach, Germany, 12. Juli 2022 - 15. Juli 2022. (2022)
18.
Meeting Abstract
Swart, E.: RNA-seq bioinformatics for “non-model” protists. In The 41st Annual Meeting of the DGP, S. 17. The 41st Annual Meeting of the German Society for Protozoology (DGP 2022), Bergisch Gladbach, Germany, 12. Juli 2022 - 15. Juli 2022. (2022)

Poster (5)

19.
Poster
Emmerich, C.: Evidence for a recent horizontal gene transfer from a close relative of Paramecium killer bacteria to Blepharisma. IX. ECOP-ISOP Joint Meeting "The Century of Protists", Wien, Austria (2023)
20.
Poster
Shaikhutdinov, N.; Seah, B.; Emmerich, C.; Moeller, H.; Paight, C.; Johnson, M.; Swart, E.: Absence of spliceosomal introns in the mixotrophic ciliate Mesodinium rubrum: how did they disappear? IX. ECOP-ISOP Joint Meeting "The Century of Protists", Wien, Austria (2023)
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