Publikationen
Ciliaten-Genomik und Molekularbiologie

Zeitschriftenartikel (13)

1.
Zeitschriftenartikel
Seah, B.; Singh, M.; Emmerich, C.; Singh, A.; Woehle, C.; Huettel, B.; Byerly, A.; Stover, N.; Sugiura, M.; Harumoto, T. et al.; Swart, E.: MITE infestation accommodated by genome editing in the germline genome of the ciliate Blepharisma. Proceedings of the National Academy of Sciences of the United States of America 120 (4), e2213985120 (2023)
2.
Zeitschriftenartikel
Singh, M.; Seah, B.; Emmerich, C.; Singh, A.; Woehle, C.; Huettel, B.; Byerly, A.; Stover, N.; Sugiura, M.; Harumoto, T. et al.; Swart, E.: Origins of genome-editing excisases as illuminated by the somatic genome of the ciliate Blepharisma. Proceedings of the National Academy of Sciences of the United States of America 120 (4), e2213887120 (2023)
3.
Zeitschriftenartikel
Singh, A.; Maurer-Alcalá, X.; Solberg, T.; Haeussermann, L.; Gisler, S.; Ignarski , M.; Swart, E.; Nowacki, M.: Chromatin remodeling is required for sRNA-guided DNA elimination in Paramecium. EMBO Journal 41 (22), e111839 (2022)
4.
Zeitschriftenartikel
Seah, B.; Emmerich, C.; Singh, A.; Swart, E.: Improved methods for bulk cultivation and fixation of Loxodes ciliates for fluorescence microscopy. Protist 173 (5), 125905 (2022)
5.
Zeitschriftenartikel
Seah, B.; Singh, A.; Swart, E.: Karyorelict ciliates use an ambiguous genetic code with context-dependent stop/sense codons. Peer Community Journal 2, e42 (2022)
6.
Zeitschriftenartikel
Rzeszutek, I.; Swart, E.; Pabian-Jewuła, S.; Russo, A.; Nowacki, M.: Early developmental, meiosis-specific proteins - Spo11, Msh4-1, and Msh5 - Affect subsequent genome reorganization in Paramecium tetraurelia. Biochimica et Biophysica Acta: Molecular Cell Research 1869 (6), 119239 (2022)
7.
Zeitschriftenartikel
Seah, B.; Swart, E.: BleTIES: Annotation of natural genome editing in ciliates using long read sequencing. Bioinformatics 37 (21), btab613, S. 3929 - 3931 (2021)
8.
Zeitschriftenartikel
Mozzicafreddo, M.; Pucciarelli, S.; Swart, E.; Piersanti, A.; Emmerich, C.; Migliorelli, G.; Ballarini, P.; Miceli, C.: The macronuclear genome of the Antarctic psychrophilic marine ciliate Euplotes focardii reveals new insights on molecular cold adaptation. Scientific Reports 11 (1), 18782 (2021)
9.
Zeitschriftenartikel
Sayavedra, L.; Li, T.; Bueno Batista, M.; Seah, B.; Booth, C.; Zhai, Q.; Chen, W.; Narbad, A.: Desulfovibrio diazotrophicus sp. nov., a sulfate-reducing bacterium from the human gut capable of nitrogen fixation. Environmental Microbiology 23 (6), S. 3164 - 3181 (2021)
10.
Zeitschriftenartikel
Rzeszutek, I.; Singh, A.: Small RNAs, Big Diseases. International Journal of Molecular Sciences 21 (16), 5699 (2020)
11.
Zeitschriftenartikel
Faktorová, D.; Nisbet, R.; Fernández Robledo , J.; Casacuberta, E.; Sudek, L.; Allen, A.; Ares, M.; Balestreri, C.; Barbrook, A.; Beardslee, P. et al.; Bender, S.; Booth, D.; Bouget, Y.-F.; Bowler, C.; Breglia, S.; Brownlee, C.; Burger, G.; Cerutti, H.; Cesaroni, R.; Chiurillo, M.; Clemente, T.; Coles, D.; Collier, J.; Cooney, E.; Coyne, K.; Docampo, R.; Dupont, C.; Edgcomb, V.; Einarsson, E.; Elustondo, P.; Federici, F.; Freire-Beneitez, V.; Freyria, N.; Fukuda, K.; García, P.; Girguis, P.; Gomaa, R.; Gornik, S.; Guo, J.; Hampl, V.; Hanawa, Y.; Haro-Contreras, E.; Hehenberger, E.; Highfield, A.; Hirakawa, Y.; Hopes, A.; Howe, C.; Hu, I.; Ibañez, J.; Irwin, N.; Ishii, Y.; Janowicz, N.; Jones, A.; Kachele, A.; Fujimura-Kamada, K.; Kaur, B.; Kaye, J.; Kazana, A.; Keeling, P.; King, N.; Klobutcher, L.; Lander, N.; Lassadi, I.; Li, Z.; Lin, S.; Lozano, J.-C.; Luan, F.; Maruyama, S.; Matute, T.; Miceli, C.; Minagawa, J.; Moosburner, M.; Najle, S.; Nanjappa, D.; Nimmo, I.; Noble, L.; Novák Vanclová, A.; Nowacki, M.; Nuñez, I.; Pain, A.; Piersanti, A.; Pucciarelli, S.; Pyrih, J.; Rest, J.; Rius, M.; Robertson, D.; Ruaud, A.; Ruiz-Trillo, I.; Sigg, M.; Silver, P.; Slamovits, C.; Smith, G.; Sprecher, B.; Stern, R.; Swart, E.; Tsaousis, A.; Tsypin, L.; Turkewitz, A.; Turnšek, J.; Valach, M.; Vergé, V.; von Dassow, P.; von der Haar, T.; Waller, R.; Wang, L.; Wen, X.; Wheeler, G.; Woods, A.; Zhang, H.; Mock, T.; Worden, A.; Lukeš, J.: Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods 17 (5), 551 (2020)
12.
Zeitschriftenartikel
Faktorová, D.; Nisbet, R.; Fernández Robledo , J.; Casacuberta, E.; Sudek, L.; Allen, A.; Ares, M.; Balestreri, C.; Barbrook, A.; Beardslee, P. et al.; Bender, S.; Booth, D.; Bouget, Y.-F.; Bowler, C.; Breglia, S.; Brownlee, C.; Burger, G.; Cerutti, H.; Cesaroni, R.; Chiurillo, M.; Clemente, T.; Coles, D.; Collier, J.; Cooney, E.; Coyne, K.; Docampo, R.; Dupont, C.; Edgcomb, V.; Einarsson, E.; Elustondo, P.; Federici, F.; Freire-Beneitez, V.; Freyria, N.; Fukuda, K.; García, P.; Girguis, P.; Gomaa, R.; Gornik, S.; Guo, J.; Hampl, V.; Hanawa, Y.; Haro-Contreras, E.; Hehenberger, E.; Highfield, A.; Hirakawa, Y.; Hopes, A.; Howe, C.; Hu, I.; Ibañez, J.; Irwin, N.; Ishii, Y.; Janowicz, N.; Jones, A.; Kachele, A.; Fujimura-Kamada, K.; Kaur, B.; Kaye, J.; Kazana, A.; Keeling, P.; King, N.; Klobutcher, L.; Lander, N.; Lassadi, I.; Li, Z.; Lin, S.; Lozano, J.-C.; Luan, F.; Maruyama, S.; Matute, T.; Miceli, C.; Minagawa, J.; Moosburner, M.; Najle, S.; Nanjappa, D.; Nimmo, I.; Noble, L.; Novák Vanclová, A.; Nowacki, M.; Nuñez, I.; Pain, A.; Piersanti, A.; Pucciarelli, S.; Pyrih, J.; Rest, J.; Rius, M.; Robertson, D.; Ruaud, A.; Ruiz-Trillo, I.; Sigg, M.; Silver, P.; Slamovits, C.; Smith, G.; Sprecher, B.; Stern, R.; Swart, E.; Tsaousis, A.; Tsypin, L.; Turkewitz, A.; Turnšek, J.; Valach, M.; Vergé, V.; von Dassow, P.; von der Haar, T.; Waller, R.; Wang, L.; Wen, X.; Wheeler, G.; Woods, A.; Zhang, H.; Mock, T.; Worden, A.; Lukeš, J.: Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods 17 (5), S. 481 - 494 (2020)
13.
Zeitschriftenartikel
Lazzaretti, D.; Bandholz-Cajamarca, L.; Emmerich, C.; Schaaf, K.; Basquin, C.; Irion, U.; Bono, F.: The crystal structure of Staufen1 in complex with a physiological RNA sheds light on substrate selectivity. Life science alliance 1 (5), e201800187 (2018)

Poster (2)

14.
Poster
Gruber-Vodicka, H.; Jäckle, O.; Seah, B.: Symbiont rejuvenation in an ancient nutritional symbiosis? Clade specific evolution of the chemosynthetic Ca. Riegeria symbionts is linked to rare host switching in the mouthless marine flatworm Paracatenula. Annual Conference of the Association for General and Applied Microbiology (VAAM 2022) Digital, Düsseldorf/Jülich, Germany (2022)
15.
Poster
Sayavedra, L.; Bueno Batista, M.; Seah, B.; Booth, C.; Zhai, Q.; Chen, W.; Narbad, A.: Desulfovibrio diazotrophica sp. nov., a Sulphate Reducing Bacterium from the Human Gut Capable of Nitrogen Fixation. World Microbe Forum 2021 (2021)

Hochschulschrift - Doktorarbeit (1)

16.
Hochschulschrift - Doktorarbeit
Singh, M.: Analysis of the somatic and germline genomes of the ciliate Blepharisma stoltei. Dissertation, 205 S., Eberhard-Karls-Universität, Tübingen, Germany (2022)

Preprint (2)

17.
Preprint
Seah, B.; Singh, M.; Emmerich, C.; Singh, A.; Woehle, C.; Huettel, B.; Byerly, A.; Stover, N.; Sugiura, M.; Harumoto, T. et al.; Swart, E.: MITE infestation of germline accommodated by genome editing in Blepharisma. (eingereicht)
18.
Preprint
Singh, M.; Seah, B.; Emmerich, C.; Singh, A.; Woehle, C.; Huettel, B.; Byerly, A.; Stover, N.; Sugiura, M.; Harumoto, T. et al.; Swart, E.: Genome editing excisase origins illuminated by somatic genome of Blepharisma. (eingereicht)
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