Behr, J.; Zeller, G.; Schweikert, G.; Hartmann, L.; Smith, L.; Rätsch, G.: De Novo RNA-seq-based genome annotation. Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference: Genome Informatics, Hinxton, UK (2010)

Stegle, O.; Drewe, P.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts. Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference: Genome Informatics, Hinxton, UK (2010)

Shervashidze, N.; Smola, A.; Borgwardt, K.: Scalable graph kernels with approximate matching of subtree patterns. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)

Drewe, P.; Stegle, O.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)

Lippert, C.; Stegle, O.; Nickisch, H.; Borgwardt, K.; Weigel, D.: Experimental design for genome-wide association studies. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)

Rätsch, G.; Jean, G.; Kahles, A.; Sonnenburg, S.; De Bona, F.; Schneeberger, K.; Hagmann, J.; Weigel, D.: PALMapper: Fast and Accurate Spliced Alignments of Sequence Reads. 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA (2010)

Chae, E.; Bomblies, K.; Lanz, C.; Weigel, D.: Divergent Alleles of Disease Resistance Gene Lead to Hybrid Incompatibility in Arabidopsis Thaliana. 21st International Conference on Arabidopsis Research (ICAR 2010), Yokohama, Japan (2010)

Felippes, F.; Ott, F.; Weigel, D.: Characterization of the Non-Cell Autonomous Effect of miRNAs and tasiRNAs in Arabidopsis Thaliana. 21st International Conference on Arabidopsis Research (ICAR 2010), Yokohama, Japan (2010)

Ho, W.-H.; Weigel, D.: Critical Amino Acid Changes Convert a Floral Promoter into Repressor. 21st International Conference on Arabidopsis Research (ICAR 2010), Yokohama, Japan (2010)

Kim, S.-T.; Weigel, D.: Differential Plastic Responses or Local Adaptions? Insights from Phenotyping Natural Populations. 21st International Conference on Arabidopsis Research (ICAR 2010), Yokohama, Japan (2010)

Manavella, P.; Toth, R.; Coupland, G.; Weigel, D.: Identification of miRNA Biogenesis Modulators by forward and Chemical Genetics. 21st International Conference on Arabidopsis Research (ICAR 2010), Yokohama, Japan (2010)

Schultheiss, S.; Busch, W.; Lohmann, J.; Kohlbacher, O.; Rätsch, G.: Identifying Gene Regulatory Modules with Support Vector Machine Kernels. 6th Annual RECOMB Satellite on Regulatory Genomics, the 5th Annual RECOMB Satellite on Systems Biology, and the 4th Annual DREAM Reverse Engineering Challenges, New York, NY, USA (2009)

Bouteillé, M.; Loudet, O.; Weigel, D.; Muler, B.: Natural variation and quantitative genetics in Arabidopsis highlights a tight relationship between root and shoot growth that loosen under water deficit. 20th International Conference on Arabidopsis Research (ICAR 2009), Edinburgh, UK (2009)

Fulton, L.; Batoux, M.; Vaddepalli, P.; Yadav, R.; Busch, W.; Andersen, S.; Jeong, S.; Lohmann, J.; Schneitz, K.: DETORQUEO, QUIRKY, and ZERZAUST, novel components involved in organ development mediated by the receptor-like kinase STRUBBELIG. 20th International Conference on Arabidopsis Research (ICAR 2009), Edinburgh, UK (2009)

Guo, Y.-L.; Cheng, J.-F.; Hu, T.; Haberer, G.; Hollister, J.; Pattyn, P.; Clark, R.; Ossowski, S.; Schneeberger, K.; Kim, S.-T. et al.; Cao, J.; Lanz, C.; Otillar, R.; Bergelson, J.; Borevitz, J.; Hall, A.; Langley, C.; Neuffer, B.; Nasrallah, J.; Savolainen, O.; Wright, S.; Grigoriev, I.; Mayer, K.; Schmutz, J.; Van de Peer, Y.; Gaut, B.; Nordborg, M.; Rokshar, D.; Weigel, D.: The Arabidopsis lyrata genome: what can we learn from the close relative of Arabidopsis thaliana. 20th International Conference on Arabidopsis Research (ICAR 2009), Edinburgh, UK (2009)

Krämer, U.; Hanikenne, M.; Kroymann, J.; Talke, I.; Haydon, M.; Lanz, C.; Motte, P.; Weigel, D.: Arabidopsis halleri as a model organism to study the extreme complex trait of metal hyperaccumulation. 20th International Conference on Arabidopsis Research (ICAR 2009), Edinburgh, UK (2009)

Laitinen, R.; Bomblies, K.; Boldt, H.; Todesco, M.; Weigel, D.: Genetic mechanisms of hybrid incompatibility in Arabidopsis thaliana. 20th International Conference on Arabidopsis Research (ICAR 2009), Edinburgh, UK (2009)

Laubinger, S.; Zeller, G.; Henz, S.; Sachsenberg, T.; Rätsch, G.; Weigel, D.: Transcriptome profiling of RNA-processing mutants: Uncovering the hidden layer of the Arabidopsis transcriptome. 20th International Conference on Arabidopsis Research (ICAR 2009), Edinburgh, UK (2009)

Maier, A.; Stehling-Sun, S.; Schilli, S.; Lohmann, J.: PERIANTHIA in proliferation and differentiation of stem cells. 20th International Conference on Arabidopsis Research (ICAR 2009), Edinburgh, UK (2009)

Plantegenet, S.; Weber, J.; Goldstein, D.; Zeller, G.; Nussbaumer, C.; Thomas, J.; Weigel, D.; Harshman, K.; Hardtke, C.: Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance. 20th International Conference on Arabidopsis Research (ICAR 2009), Edinburgh, UK (2009)