Publications
 

Lutz, U.; Bezrukov, I.; Schwab, R.; Yuan, W.; Kollmar, M.; Weigel, D.: Species-wide gene editing of a flowering regulator reveals hidden phenotypic variation. PLOS Biology 23 (6), e3003226 (2025)

Cheng, L.; Wang, N.; Bao, Z.; Zhou, Q.; Guarracino, A.; Yang, Y.; Wang, P.; Zhang, Z.; Tang, D.; Zhang, P. et al.; Wu, Y.; Zhou, Y.; Zheng, Y.; Hu, Y.; Liang, Q.; Ma, Z.; Lassois, L.; Zhang, C.; Lucas, W.; Garrison, E.; Stein, N.; Städler, T.; Zhou, Y.; Huang, S.: Leveraging a phased pangenome for haplotype design of hybrid potato. Nature 640 (8058), pp. 408 - 417 (2025)

Du, K.; Deusch, O.; Bezrukov, I.; Lanz, C.; Guiguen, Y.; Hoffmann, M.; Habring, A.; Weigel, D.; Schartl, M.; Dreyer, C.: Identification of the male-specific region on the guppy Y Chromosome from a haplotype-resolved assembly. Genome Research 35 (3), pp. 489 - 498 (2025)

Morales-Díaz, N.; Sushko, S.; Campos-Dominguez, L.; Kopalli, V.; Golicz, A.; Castanera, J.; Casacuberta, M.: Tandem LTR-retrotransposon structures are common and highly polymorphic in plant genomes. Mobile DNA 16 (1), 10 (2025)

Wang, H.; Caetano-Andrade, V.; Boivin, N.; da Silva Costa, F.; Weigel, D.; Roberts, P.: Long-term human influence on the demography and genetic diversity of the hyperdominant Bertholletia excelsa in the Amazon Basin. Current Biology 35 (3), pp. 629 - 639 (2025)

Chen, H.; Xiong, F.; Wangler, A.-M.; Bischoff, T.; Wang, K.; Miao, Y.; Slane, D.; Schwab, R.; Laux, T.; Bayer, M.: Phosphorylation-Dependent Activation of the bHLH Transcription Factor ICE1/SCRM Promotes Polarization of the Arabidopsis Zygote. New Phytologist 245 (3), pp. 1029 - 1039 (2025)

Mencia, R.; Arce, A.; Houriet, C.; Xian, W.; Contreras, A.; Shirsekar, G.; Weigel, D.; Manavella, P.: Transposon-triggered epigenetic chromatin dynamics modulate EFR-related pathogen response. Nature Structural & Molecular Biology 32 (1), pp. 199 - 211 (2025)

Xian, W.; Bezrukov, I.; Bao, Z.; Vorbrugg, S.; Gautam, A.; Weigel, D.: TIPPo: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with High-Fidelity Data. Molecular Biology and Evolution 42 (1), msae247 (2025)

Bao, Z.; Guarracino, A.; Rabanal, F.; Vorbrugg, S.; Xian, W.; Garrison, E.; Weigel, D.: Understanding mutational processes from Arabidopsis pangenome graphs. In 2025 Meeting on Biology of Genomes, p. 30. 38th Annual Meeting on Biology of Genomes 2025, Cold Spring Harbor, NY, USA, May 06, 2025 - May 10, 2025. (2025)

Magris, G.; Zelasco, S.; Salimonti, A.; Forgione, I.; Sirangelo, T.; Carbonell Bejerano, P.; Weigel, D.; Bagnaresi, P.; Di Gaspero, G.; Scalabrin, S. et al.; Scaglione, D.; Usai, G.; Mascagni, F.; Natali, L.; Cavallini, A.; Marchese, A.; Marra, F.; Mulas, M.; Medda, S.; Muleo, R.; Baldoni, L.; Perri, E.; Cattivelli, L.; Carbone, F.; Morgante, M.: Analysis Based on New Olive Reference Genome Has Revealed That Only a Few Generations of Sexual Reproduction Separate Cultivated Olive from Its Wild Ancestor. In Plant and Animal Genome 32 Conference (PAG 2025). Plant and Animal Genome 32 Conference (PAG 2025), San Diego, CA, USA, January 10, 2025 - January 15, 2025. (2025)

Yuan, W.: Exploring Plant-Microbe Interactions to Enhance Plant Disease Tolerance. BioConnect Seminar: Max Planck Institute for Biology, Tübingen, Germany (2025)

Lucke, M.: Copy, change, repeat: Global diversity of A.thaliana plant immune receptor RPP1. BioConnect Seminar: Max Planck Institute for Biology, Tübingen, Germany (2025)

Weigel, D.: Imperfect Plants In an Imperfect World. ETH Zürich: Institute of Microbiology, Zürich, Switzerland (2025)

Weigel, D.: "Imperfect plants in an imperfect world. PLANT Workshop: Institut Pascal, Université Paris-Saclay, Paris, France (2025)

Weigel, D.: Imperfect Plants In an Imperfect World. Université Paris: Section Ecologie et Biologie de l’Evolution, Paris, France (2025)

Weigel, D.: Imperfect Plants In an Imperfect World. Max Planck Institute of Biochemistry: MPIB Seminar , Martinsried, Germany (2025)

Ofir, G.: Innovation and Conservation in Plant Immuno-Genomics. BioConnect Seminar: Max Planck Institute for Biology, Tübingen, Germany (2025)

Ashkenazy, H.; Roitman, S.; Shalev, O.; Karasov, T.; Lundberg, D.; Neumann, M.; Weigel, D.: Evolution of Arabidopsis thaliana-associated Pseudomonas and Sphingomonas Strains. 2025 IS-MPMI Congress, Köln, Germany (2025)

Huang, C.-Y.; Lucke, M.; Weigel, D.; Schwab, R.: Diversity of Hyaloperonospora arabidopsidis Effectors in Natural Populations. 2025 IS-MPMI Congress, Köln, Germany (2025)

Kim, J.; Weigel, D.; Zhu, W.: Regulation of the ion channel-like protein ACD6 via small proteins to fine-tune immune regulation in Arabidopsis thaliana. 2025 IS-MPMI Congress, Köln, Germany (2025)