Publications
Structural Bioinformatics
Journal Article (45)
1.
Journal Article
22 (2), pp. 399 - 411 (2025)
RNA-Puzzles Round V: blind predictions of 23 RNA structures. Nature Methods 2.
Journal Article
34 (1), e5244 (2025)
Applicability of AlphaFold2 in the modeling of dimeric, trimeric, and tetrameric coiled-coil domains. Protein Science 3.
Journal Article
25 (15), e202400202 (2024)
Expanding the available RNA labeling toolbox with CutA nucleotidyltransferase for efficient transcript labeling with purine and pyrimidine nucleotide analogs. ChemBioChem 4.
Journal Article
33 (1), e4846 (2024)
AlphaFold2 captures the conformational landscape of the HAMP signaling domain. Protein Science 5.
Journal Article
14 (1), 7460 (2023)
Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts. Nature Communications 6.
Journal Article
39 (10), btad579 (2023)
pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models. Bioinformatics 7.
Journal Article
89 (4), pp. 1211 - 1219 (2022)
TREM2 Gene Compound Heterozygosity in Neurodegenerative Disorders. Journal of Alzheimer's Disease 8.
Journal Article
38 (9), pp. 2633 - 2635 (2022)
localpdb: A Python package to manage protein structures and their annotations. Bioinformatics 9.
Journal Article
12 (1), 34 (2022)
Siah-1-interacting protein regulates mutated huntingtin protein aggregation in Huntington's disease models. Cell & Bioscience 10.
Journal Article
23 (1), bbab371 (2022)
Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins. Briefings in Bioinformatics 11.
Journal Article
22 (24), 13451 (2021)
Interplay between DsbA1, DsbA2 and C8J_1298 periplasmic oxidoreductases of Campylobacter jejuni and their impact on bacterial physiology and pathogenesis. International Journal of Molecular Sciences 12.
Journal Article
17 (10), e1009502 (2021)
Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor. PLoS Computational Biology 13.
Journal Article
21 (1), 32 (2021)
Revealing biophysical properties of KfrA-type proteins as a novel class of cytoskeletal, coiled-coil plasmid-encoded proteins. BMC Microbiology 14.
Journal Article
36 (22-23), pp. 5368 - 5376 (2020)
A library of coiled-coil domains: from regular bundles to peculiar twists. Bioinformatics 15.
Journal Article
21 (1), 179 (2020)
Self-analysis of repeat proteins reveals evolutionarily conserved patterns. BMC Bioinformatics 16.
Journal Article
15 (3), e0230366 (2020)
C8J_1298, a bifunctional thiol oxidoreductase of Campylobacter jejuni, affects Dsb (disulfide bond) network functioning. PLoS One 17.
Journal Article
9 (1), 11533 (2019)
ANO5 mutations in the Polish limb girdle muscular dystrophy patients: Effects on the protein structure. Scientific Reports 18.
Journal Article
35 (16), pp. 2790 - 2795 (2019)
DeepCoil: a fast and accurate prediction of coiled-coil domains in protein sequences. Bioinformatics 19.
Journal Article
9, 6888 (2019)
PiPred: a deep-learning method for prediction of π-helices in protein sequences. Scientific Reports 20.
Journal Article
2019, bay148 (2019)
RRMdb: an evolutionary-oriented database of RNA recognition motif sequences. Database: The Journal of Biological Databases and Curation