Publications
_{Structural Bioinformatics}

Berdyński , B.; Ludwiczak, J.; Barczak, A.; Barcikowska-Kotowicz, M.; Kuźma-Kozakiewicz, M.; Dunin-Horkawicz, S.; Żekanowski, C.; Borzemska, B.: TREM2 Gene Compound Heterozygosity in Neurodegenerative Disorders. Journal of Alzheimer's Disease 89 (4), pp. 1211 - 1219 (2022)

Ludwiczak, J.; Winski, A.; Dunin-Horkawicz, S.: localpdb: A Python package to manage protein structures and their annotations. Bioinformatics 38 (9), pp. 2633 - 2635 (2022)

Latoszek, E.; Wiweger, M.; Ludwiczak, J.; Dunin-Horkawicz, S.; Kuznicki, J.; Czeredys, M.: Siah-1-interacting protein regulates mutated huntingtin protein aggregation in Huntington's disease models. Cell & Bioscience 12 (1), 34 (2022)

Kamiński, K.; Ludwiczak, J.; Jasiński, M.; Bukala, A.; Madaj, R.; Szczepaniak, K.; Dunin-Horkawicz, S.: Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins. Briefings in Bioinformatics 23 (1), bbab371 (2022)

Coles, M.; Dunin-Horkawicz, S.; Hartmann, M.; Lupas, A.: Revisiting HAMP in the AlphaFold age. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 12. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)

Lupas, A.; Dunin-Horkawicz, S.; Martinez-Goikoetxea, M.; Hartmann, M.; Hernandez Alvarez, B.: The structural diversity of natural coiled coils. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 39. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)

Madaj, R.; Kamiński, K.; Wiński, A.; Ludwiczak, J.; Dunin-Horkawicz, S.: Coiled-coil domains and AlphaFold2: friends or foes? In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 21. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)

Ptacek, J.; Albrecht, R.; Dunin-Horkawicz, S.; Schultz, J.; Coles, M.; Hartmann, M.; Lupas, A.: Archaeal receptor Af1503: an ideal model for structural and functional studies of transmembrane signaling. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 54. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)

Krakowski, K.; Łabędzka-Dmoch, K.; Golik, P.; Dunin-Horkawicz, S.: Functional analysis of prokaryotic homologs of programmed cell death factors. In Meeting of the EMBO Young Investigator Network on Computational Methods in Ecology and Evolutionary Biology of Microbes, p. 15. Meeting of the EMBO Young Investigator Network on Computational Methods in Ecology and Evolutionary Biology of Microbes, Chęciny, Poland, July 07, 2022 - July 09, 2022. (2022)

Kubica, J.; Gront, D.; Dunin-Horkawicz, S.: Modeling of a putative programmed cell death receptor. In Meeting of the EMBO Young Investigator Network on Computational Methods in Ecology and Evolutionary Biology of Microbes, p. 26. Meeting of the EMBO Young Investigator Network on Computational Methods in Ecology and Evolutionary Biology of Microbes, Chęciny, Poland, July 07, 2022 - July 09, 2022. (2022)