Ludwiczak, J.; Winski, A.; Szczepaniak , A.; Alva, V.; Dunin-Horkawicz, S.: DeepCoil: a fast and accurate prediction of coiled-coil domains in protein sequences. Bioinformatics 35 (16), pp. 2790 - 2795 (2019)

Alva, V.; Lupas, A.: Histones Predate the Split Between Bacteria and Archaea. Bioinformatics 35 (14), pp. 2349 - 2353 (2019)

Ludwiczak, J.; Winski, A.; Marinho da Silva Neto, A.; Szczepaniak, K.; Alva, V.; Dunin-Horkawicz, S.: PiPred: a deep-learning method for prediction of π-helices in protein sequences. Scientific Reports 9, 6888 (2019)

Zimmermann, L.; Stephens, A.; Nam, S.-Z.; Rau, D.; Kübler, J.; Lozajic, M.; Gabler, F.; Söding, J.; Lupas, A.; Alva, V.: A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core. Journal of Molecular Biology 430 (15), pp. 2237 - 2243 (2018)

Alvarez-Carreño, C.; Alva, V.; Becerra, A.; Lazcano, A.: Structure, function and evolution of the hemerythrin-like domain superfamily. Protein Science 27 (4), pp. 848 - 860 (2018)

Sgromo, A.; Raisch, T.; Backhaus, C.; Keskeny, C.; Alva, V.; Weichenrieder, O.; Izaurralde, E.: Drosophila Bag-of-marbles directly interacts with the CAF40 subunit of the CCR4-NOT complex to elicit repression of mRNA targets. RNA-A Publication of the RNA Society 24 (3), pp. 381 - 395 (2018)

Alva, V.; Lupas, A.: From ancestral peptides to designed proteins. Current Opinion in Structural Biology 48, pp. 103 - 109 (2018)

Michalik, M.; Orwick-Rydmark, M.; Habeck, M.; Alva, V.; Arnold, T.; Linke, D.: An evolutionarily conserved glycine-tyrosine motif forms a folding core in outer membrane proteins. PLoS One 12 (8), e0182016 (2017)

Fuchs, A.; Alva, V.; Maldoner, L.; Albrecht, R.; Hartmann, M.; Martin, J.: The Architecture of the Anbu Complex Reflects an Evolutionary Intermediate at the Origin of the Proteasome System. Structure 25 (6), pp. 834 - 845 (2017)

Lupas, A.; Alva, V.: Ribosomal proteins as documents of the transition from unstructured (poly)peptides to folded proteins. Journal of Structural Biology 198 (2), pp. 74 - 81 (2017)

Alva, V.; Lupas, A.: The TULIP superfamily of eukaryotic lipid-binding proteins as a mediator of lipid sensing and transport. Biochimica et Biophysica Acta: BBA 1861 (8 Part B), pp. 913 - 923 (2016)

Alva, V.; Nam, S.-Z.; Söding, J.; Lupas, A.: The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis. Nucleic Acids Research (London) 44 (W1), pp. W410 - W415 (2016)

Alva, V.: Protein Sequence Analysis Using the MPI Bioinformatics Toolkit. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 9. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)

Dobbelstein, A.; Lupas, A.; Alva, V.: Variety of domains in trimeric autotransporter adhesins. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 17. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)

Ludwiczak, J.; Winski, A.; Hernandez-Alvarez, B.; Alva, V.; Malicki, M.; Marinho da Silva Neto, A.; Szczepaniak, K.; Dunin-Horkawicz, S.: Machine learning and simulation methods for deciphering sequence-structure relationships in proteins. In BioInformatics in Torun 2019 - BIT19, p. 4. BioInformatics in Torun 2019 (BIT19), Torun, Poland, June 27, 2019 - June 29, 2019. (2019)

Ludwiczak, J.; Wiński, A.; Marinho da Silva Neto, A.; Szczepaniak, K.; Alva, V.; Dunin-Horkawicz, S.: PiPred: a deep-learning method for prediction of pi-helices in protein sequences. In BioInformatics in Torun 2019 - BIT19, p. 61. BioInformatics in Torun 2019 (BIT19), Torun, Poland, June 27, 2019 - June 29, 2019. (2019)

Ludwiczak, J.; Wiński, A.; Szczepaniak, K.; Alva, V.; Dunin-Horkawicz, S.: DeepCoil: a fast and accurate prediction of coiled-coil domains in protein sequences. In BioInformatics in Torun 2019 - BIT19, p. 40. BioInformatics in Torun 2019 (BIT19), Torun, Poland, June 27, 2019 - June 29, 2019. (2019)

Alva, V.; Zhu, H.; Hartmann, M.; Pereira, J.; Springer, F.; Martin, J.; Lupas, A.: Ribosomal proteins as documents of the transition from unstructured polypeptides to folded proteins. In CAS Conference 2018: Molecular Origins of LIFE, p. 19. CAS Conference 2018: Molecular Origins of LIFE, München, Germany, October 11, 2018 - October 12, 2018. (2018)

Alva, V.; Nam, S.-Z.; Rau, D.; Stephens, A.; Kübler, J.; Lozajic, M.; Gabler, F.; Söding, J.; Lupas, A.: The MPI Bioinformatics Toolkit and its application to protein analysis and design. In 7th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 5. 7th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 03, 2017 - September 08, 2017. (2017)

Alva, V.: Molecular Logic of Prokaryotic Surface Layers. Distinguished Speaker Seminar Series (DSSS): Max-Planck-Campus , Tübingen, Germany (2023)