Publications of K Qiu

Qiu, K.; Lupas, A.; Dunin-Horkawicz, S.: pLM-Repeat: Exploiting the sequence representations of protein language models for sensitive repeat detection. Protein Science 35 (5), e70541 (2026)

Hu, Y.; Schwab, S.; Qiu, K.; Zhang, Y.; Bär, K.; Reichle, H.; Panzera, A.; Lupas, A.; Hartmann, M.; Dame, R. et al.; Alva, V.; Hernandez Alvarez, B.: DNA Wrapping by a Tetrameric Bacterial Histone. Nature Communications 16, 11108 (2025)

Wu, Y.; Chen, K.-W.; Li, Y.-N.; Qiu, K.-Y.; Lu, G.; Shu, T.; Sun, T.-Y.; Hou , Z.-Q.; Wu, Y.-D.; Yu, L.-J.: Propeptide-Mediated Allosteric Regulation of Xylanase Xyl-1: An Integrated Experimental and Computational Analysis. Journal of Agricultural and Food Chemistry 71 (30), pp. 11692 - 11703 (2023)

Qiu, K.; Ben-Tal, N.; Kolodny, R.: Similar protein segments shared between domains of different evolutionary lineages. Protein Science 31 (9), e4407 (2022)

Qiu, K.: Detecting protein repeats using sequence embeddings from protein language models. In 9th Alpbach Workshop on: Repeat Proteins – Biology & Design. 9th Alpbach Workshop: Repeat Proteins – Biology & Design, Alpbach, Austria, September 07, 2025 - September 11, 2025. (2025)

Qiu, K.: Connecting distant proteins with similar structures: a path perspective. In Annual Meeting of the Society for Molecular Biology & Evolution (SMBE 2025), p. 153. Annual Meeting of the Society for Molecular Biology & Evolution (SMBE 2025) , Beijing, China, July 20, 2025 - July 24, 2025. (2025)

Qiu, K.: Exploiting sequence representations to detect protein repeats and explore the fluid sequence space of repeat proteins. In PhD Students’ Symposium 2024. PhD Students’ Symposium 2024, Tübingen, Germany, June 19, 2024 - June 20, 2024. (2024)

Li, L.; Qiu, K.; Witte, H.; Martin, J.; Lupas, A.; Sommer, R.: A unique cysteine-type protein domain regulates cuticular extracellular matrix assembly in nematodes. 5th International Pristionchus Meeting, Tübingen, Germany (2026)

Li, L.; Qiu, K.; Witte, H.; Martin, J.; Lupas, A.; Sommer, R.: A unique cysteine-type protein domain regulates cuticular extracellular matrix assembly in nematodes. 5th International Pristionchus Meeting, Tübingen, Germany (2026)

Qiu, K.: Evolving Proteins Under Fitness Constraints: Does Complex Protein Modeling Help? 2026 Society for Molecular Biology and Evolution Conference (SMBE 2026), Copenhagen, Denmark (2026)

Qiu, K.; Ludwiczak, J.; Lupas, A.; Dunin-Horkawicz, S.: Beyond profiles: supervised repeat annotation using protein embeddings. (submitted)

Li, L.; Qiu, K.; Witte, H.; Martin, J.; Lupas, A.; Sommer, R.: A unique Cysteine-type protein domain regulates cuticular extracellular matrix assembly in nematodes. (submitted)

Qiu, K.; Dunin-Horkawicz, S.; Lupas, A.: Exploiting protein language model sequence representations for repeat detection. (submitted)