Publications of K Borgwardt

Togninalli, M.; Seren, Ü.; Freudenthal, J.; Monroe, J.; Meng, D.; Nordborg, M.; Weigel, D.; Borgwardt, K.; Korte, A.; Grimm, D.: AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana. Nucleic Acids Research (London) 48 (D1), pp. D1063 - D1068 (2020)

Togninalli, M.; Seren, U.; Meng, D.; Fitz, J.; Nordborg, M.; Weigel, D.; Borgwardt, K.; Korte, A.; Grimm, D.: The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog. Nucleic Acids Research (London) 46 (D1), pp. D1150 - D1156 (2018)

Grimm, D.; Roqueiro, D.; Salomé, P.; Kleeberger, S.; Greshake, B.; Zhu, W.; Liu, C.; Lippert, C.; Stegle, O.; Schölkopf, B. et al.; Weigel, D.; Borgwardt, K.: easyGWAS: A Cloud-Based Platform for Comparing the Results of Genome-Wide Association Studies. Plant Cell 29 (1), pp. 5 - 19 (2017)

Seren, Ü.; Grimm, D.; Fitz, J.; Weigel, D.; Nordborg, M.; Borgwardt, K.; Korte, A.: AraPheno: a public database for Arabidopsis thaliana phenotypes. Nucleic Acids Research (London) 45 (D1), pp. D1054 - D1059 (2017)

Seymour, D.; Chae, E.; Grimm, D.; Martín Pizarro, C.; Habring, A.; Vasseur, F.; Rakitsch, B.; Borgwardt, K.; Koenig, D.; Weigel, D.: Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids. Proceedings of the National Academy of Sciences of the United States of America 113 (46), pp. E7317 - E7326 (2016)

McGaughran, A.; Rödelsperger, C.; Grimm, D.; Meyer, J.; Moreno, E.; Morgan, K.; Leaver, M.; Serobyan, V.; Rakitsch, B.; Borgwardt, K. et al.; Sommer, R.: Genomic Profiles of Diversification and Genotype-Phenotype Association in Island Nematode Lineages. Molecular Biology and Evolution 33 (9), pp. 2257 - 2272 (2016)

1001 Genomes Consortium; Alonso-Blanco, C.; Andrade, J.; Becker, C.; Bemm, F.; Bergelson, J.; Borgwardt, K.; Cao, J.; Chae, E.; Dezwaan, T. et al.; Ding, W.; Ecker, J.; Exposito-Alonso, M.; Farlow, A.; Fitz, J.; Gan, X.; Grimm, D.; Hancock, A.; Henz, S.; Holm, S.; Horton, M.; Jarsulic, M.; Kerstetter, R.; Korte, A.; Korte, P.; Lanz, C.; Lee, C.-R.; Meng, D.; Michael, T.; Mott, R.; Muliyati, N.; Nägele, T.; Nagler, M.; Nizhynska, V.; Nordborg, M.; Novikova, P.; Picó, F.; Platzer, A.; Rabanal, F.; Rodriguez, A.; Rowan, B.; Salomé, P.; Schmid, K.; Schmitz, R.; Seren, Ü.; Sperone, F.; Sudkamp, M.; Svardal, H.; Tanzer, M.; Todd, D.; Volchenboum, S.; Wang, C.; Wang, G.; Wang, X.; Weckwerth, W.; Weigel, D.; Zhou, X.: 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Cell 166, pp. 481 - 491 (2016)

Llinares-López, F.; Grimm, D.; Bodenham, D.; gieraths uwe; Sugiyama, M.; Rowan, B.; Borgwardt, K.: Genome-wide detection of intervals of genetic heterogeneity associated with complex traits. Bioinformatics 31 (12), pp. i240 - i249 (2015)

Grimm, D.; Azencott, C.-A.; Aicheler, F.; Gieraths, U.; MacArthur, D.; Samocha, K.; Cooper, D.; Stenson, P.; Daly, M.; Smoller, J. et al.; Duncan, L.; Borgwardt, K.: The evaluation of tools used to predict the impact of missense variants is hindered by two types of circularity. Human Mutations 36 (5), pp. 513 - 523 (2015)

Hagmann, J.; Becker, C.; Müller, J.; Stegle, O.; Meyer, R.; Wang, G.; Schneeberger, K.; Fitz, J.; Altmann, T.; Bergelson, J. et al.; Borgwardt, K.; Weigel, D.: Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage. PLoS Genetics 11 (1), e1004920 (2015)

Azencott, C.-A.; Grimm, D.; Sugiyama, M.; Kawahara, Y.; Borgwardt, K.: Efficient network-guided multi-locus association mapping with graph cuts. Bioinformatics 29 (13), pp. 171 - 179 (2013)

Grimm, D.; Hagmann, J.; Koenig, D.; Weigel, D.; Borgwardt, K.: Accurate indel prediction using paired-end short reads. BMC Genomics 14, 132 (2013)

Rakitsch, B.; Lippert, C.; Stegle, O.; Borgwardt, K.: LMM-Lasso: A Lasso Multi-Marker Mixed Model for Association Mapping with Population Structure Correction. Bioinformatics 29 (2), pp. 206 - 214 (2013)

Kam-Thong, T.; Azencott, C.-A.; Cayton, L.; Pütz, B.; Altmann, A.; Karbalai, N.; Sämann, P.; Schölkopf, B.; Müller-Myhsok, B.; Borgwardt, K.: GLIDE: GPU-Based Linear Regression for Detection of Epistasis. Human Heredity 73 (4), pp. 220 - 236 (2012)

Windram, O.; Madhou, P.; McHattie, S.; Hill, C.; Hickman, V.; Cooke, E.; Jenkins, D.; Penfold, C.; Baxter, L.; Breeze, E. et al.; Kiddle, S.; Rhodes, J.; Atwell, S.; Kliebenstein, D.; Kim, Y.-S.; Stegle, O.; Borgwardt, K.; Zhang, C.; Tabrett, A.; Legaie, R.; Moore, J.; Finkenstadt, B.; Wild, D.; Mead, A.; Rand, D.; Beynon, J.; Ott, S.; Buchanan-Wollaston, V.; Denby, K.: Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis. The Plant Cell 24 (9), pp. 3530 - 3557 (2012)

Karaletsos, T.; Stegle, O.; Dreyer, C.; Winn, J.; Borgwardt, K.: ShapePheno: Unsupervised extraction of shape phenotypes from biological image collections. Bioinformatics 28 (7), pp. 1001 - 1008 (2012)

Becker, C.; Hagmann, J.; Müller, J.; Koenig, D.; Stegle, O.; Borgwardt, K.; Weigel, D.: Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature 480 (7376), pp. 245 - 249 (2011)

Cao, J.; Schneeberger, K.; Ossowski, S.; Günther, T.; Bender, S.; Fitz, J.; König, D.; Lanz, C.; Stegle, O.; Lippert, C. et al.; Wang, X.; Ott, F.; Müller, J.; Alonso-Blanco, C.; Borgwardt, K.; Schmid, K.; Weigel, D.: Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nature Genetics 43 (10), pp. 956 - 963 (2011)

Shervashidze, N.; Schweitzer, P.; van Leeuwen , E.; Mehlhorn, K.; Borgwardt, M.: Weisfeiler-Lehman Graph Kernels. The Journal of Machine Learning Research 12, pp. 2539 - 2561 (2011)

Kam-Thong, T.; Czamara, D.; Tsuda, K.; Borgwardt, K.; Lewis, C.; Erhardt-Lehmann , A.; Hemmer, B.; Rieckmann, P.; Daake, M.; Weber, F. et al.; Wolf, C.; Ziegler, A.; Pütz, B.; Holsboer , F.; Schölkopf, B.; Müller-Myhsok, B.: EPIBLASTER-fast exhaustive two-locus epistasis detection strategy using graphical processing units. European Journal of Human Genetics 19 (4), pp. 465 - 471 (2011)