Publications of F Bemm

Barragan, A.; Collenberg, M.; Schwab, R.; Kersten, S.; Kerstens, M.; Požárová, D.; Bezrukov, I.; Bemm, F.; Kolár, F.; Weigel, D.: Deleterious Phenotypes in Wild Arabidopsis arenosa Populations Are Common and Linked to Runs of Homozygosity. G3: Genes, Genomes, Genetics 14 (3), jkad290 (2024)

Fraser, B.; Whiting, J.; Paris, J.; Weadick, C.; Parsons, P.; Charlesworth, D.; Bergero, R.; Bemm, F.; Hoffmann, M.; Kottler, V. et al.; Liu, C.; Dreyer, C.; Weigel, D.: Improved Reference Genome Uncovers Novel Sex-Linked Regions in the Guppy (Poecilia reticulata). Genome Biology and Evolution 12 (10), pp. 1789 - 1805 (2020)

Kreiner, J.; Giacomini, D.; Bemm, F.; Waithaka, B.; Regalado, J.; Lanz, C.; Hildebrandt, J.; Sikkema, P.; Tranel, P.; Weigel, D. et al.; Stinchcombe, J.; Wright, S.: Multiple modes of convergent adaptation in the spread of glyphosate-resistant Amaranthus tuberculatus. Proceedings of the National Academy of Sciences of the United States of America 116 (42), pp. 21076 - 21084 (2019)

Van de Weyer, A.-L.; Monteiro, F.; Furzer, O.; Nishimura, M.; Cevik, V.; Witek, K.; Jones, J.; Dangl, J.; Weigel, D.; Bemm, F.: A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana. Cell 178 (5), pp. 1260 - 1272 (2019)

Koenig, D.; Hagmann, J.; Li, R.; Bemm, F.; Slotte, T.; Neuffer, B.; Wright, S.; Weigel, D.: Long-term balancing selection drives evolution of immunity genes in Capsella. eLife 8, e43606 (2019)

Zhu, W.; Zaidem, M.; Van de Weyer, A.-L.; Gutaker, R.; Chae, E.; Kim, S.-T.; Bemm, F.; Lei, L.; Todesco, M.; Schwab, R. et al.; Unger, F.; Beha, M.; Demar, M.; Weigel, D.: Modulation of ACD6 dependent hyperimmunity by natural alleles of an Arabidopsis thaliana NLR resistance gene. PLoS Genetics 14 (9), e1007628 (2018)

Alexandre, C.; Urton, J.; Jean-Baptiste, K.; Huddleston, J.; Dorrity, M.; Cuperus, J.; Sullivan, A.; Bemm, F.; Jolic, D.; Arsovski, A. et al.; Thompson, A.; Nemhauser, J.; Fields, S.; Weigel, D.; Bubb, K.; Queitsch, C.: Complex Relationships between Chromatin Accessibility, Sequence Divergence, and Gene Expression in Arabidopsis thaliana. Molecular Biology and Evolution 35 (4), pp. 837 - 854 (2018)

Michael, T.; Jupe, F.; Bemm, F.; Motley, S.; Sandoval, J.; Lanz, C.; Loudet, O.; Weigel, D.; Ecker, J.: High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nature Communications 9, 541 (2018)

Rödelsperger, C.; Meyer, J.; Prabh, N.; Lanz, C.; Bemm, F.; Sommer, R.: Single-Molecule Sequencing Reveals the Chromosome-Scale Genomic Architecture of the Nematode Model Organism Pristionchus pacificus. Cell Reports 21 (3), pp. 834 - 844 (2017)

Jaleta, T.; Zhou, S.; Bemm, F.; Schär, F.; Khieu, V.; Muth, S.; Odermatt, P.; Lok, J.; Streit, A.: Different but overlapping populations of Strongyloides stercoralis in dogs and humans: Dogs as a possible source for zoonotic strongyloidiasis. PLoS Neglected Tropical Diseases 11 (8), e0005752 (2017)

Ankenbrand, M.; Weber, L.; Becker, D.; Förster, F.; Bemm, F.: TBro: visualization and management of de novo transcriptomes. Database: The Journal of Biological Databases and Curation 2016, baw146 (2016)

1001 Genomes Consortium; Alonso-Blanco, C.; Andrade, J.; Becker, C.; Bemm, F.; Bergelson, J.; Borgwardt, K.; Cao, J.; Chae, E.; Dezwaan, T. et al.; Ding, W.; Ecker, J.; Exposito-Alonso, M.; Farlow, A.; Fitz, J.; Gan, X.; Grimm, D.; Hancock, A.; Henz, S.; Holm, S.; Horton, M.; Jarsulic, M.; Kerstetter, R.; Korte, A.; Korte, P.; Lanz, C.; Lee, C.-R.; Meng, D.; Michael, T.; Mott, R.; Muliyati, N.; Nägele, T.; Nagler, M.; Nizhynska, V.; Nordborg, M.; Novikova, P.; Picó, F.; Platzer, A.; Rabanal, F.; Rodriguez, A.; Rowan, B.; Salomé, P.; Schmid, K.; Schmitz, R.; Seren, Ü.; Sperone, F.; Sudkamp, M.; Svardal, H.; Tanzer, M.; Todd, D.; Volchenboum, S.; Wang, C.; Wang, G.; Wang, X.; Weckwerth, W.; Weigel, D.; Zhou, X.: 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Cell 166, pp. 481 - 491 (2016)

Kawakatsu, T.; Huang, S.-S.; Jupe, F.; Sasaki, E.; Schmitz, R.; Urich, M.; Castanon, R.; Nery, J.; Barragan, C.; He, Y. et al.; Chen, H.; Dubin, M.; Lee, C.-R.; Wang, C.; Bemm, F.; Becker, C.; O'Neil, R.; O'Malley, R.; Quarless, D.; 1001 Genomes Consortium; Schork, N.; Weigel, D.; Nordborg, M.; Ecker, J.: Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell 166 (2), pp. 492 - 505 (2016)

Bemm, F.; Becker, D.; Larisch, C.; Kreuzer, I.; Escalante-Perez, M.; Schulze, W.; Ankenbrand, M.; Van de Weyer, A.-L.; Krol, E.; Al-Rasheid, R. et al.; Mithöfer, A.; Weber, A.; Schultz, J.; Hedrich, R.: Venus flytrap carnivorous lifestyle builds on herbivore defense strategies. Genome Research 26, pp. 812 - 825 (2016)

Bemm, F.; Weiß, C.; Schultz, J.; Förster, F.: Genome of a tardigrade: Horizontal gene transfer or bacterial contamination? Proceedings of the National Academy of Sciences of the United States of America 113 (22), pp. E3054 - E3056 (2016)

Scherzer, S.; Böhm, J.; Krol, E.; Shabala, L.; Kreuzer, I.; Larisch, C.; Bemm, F.; Al-Rasheid, K.; Shabala, S.; Rennenberg, H. et al.; Neher, E.; Hedrich, R.: Calcium sensor kinase activates potassium uptake systems in gland cells of Venus flytraps. Proceedings of the National Academy of Sciences of the United States of America 112 (23), pp. 7309 - 7314 (2015)

Schwandner, A.; Ochßner, I.; Hausmann, L.; Kamal, N.; Pucker, B.; Holtgräwe, D.; Bemm, F.; Weigel, D.; Weisshaar, B.; Töpfer, R.: Determination of genetic loci in the control network of grapevine flowering. XII International Conference on Grapevine Breeding and Genetics, Bordeaux, France, July 15, 2018 - July 20, 2018. ISHS Acta Horticulturae 1248, O42, pp. 331 - 336 (2018)

Furzer, O.; Van de Weyer, A.-L.; Monteiro, F.; Nishimura, M.; Cevik, V.; Witek, K.; Jones, J.; Dangl, J.; Weigel, D.; Bemm, F.: The Arabidopsis thaliana pan-NLRome. In 30th International Conference on Arabidopsis Research (ICAR 2019), 507. 30th International Conference on Arabidopsis Research (ICAR 2019), Wuhan, China, June 16, 2019 - June 21, 2019. (2019)

Kreiner, M.; Giacomini, D.; Waithaka, B.; Bemm, F.; Lanz, C.; Hildebrandt, J.; Regalado, J.; Sikkema, P.; Tranel, P.; Weigel, D. et al.; Stinchcombe, J.; Wright, S.: Whole-Genome Sequencing Provides Insights into Waterhemp Evolution. In Fifty-Ninth Meeting of the Weed Science Society of America (WSSA 2019). Fifty-Ninth Meeting of the Weed Science Society of America (WSSA 2019), New Orleans, LA, USA, February 11, 2019 - February 14, 2019. (2019)

Giacomini, D.; Kreiner, J.; Waithaka, B.; Bemm, F.; Lanz, C.; Hildebrandt, J.; Regalado, J.; Sikkema, P.; Stinchcombe, J.; Wright, S. et al.; Weigel, D.; Tranel, P.: A High-Quality Whole-Genome Assembly of Waterhemp (Amaranthus tuberculatus). In 2018 North Central Weed Science Society Proceedings, 73, p. 23. 73rd Annual Meeting of the North Central Weed Science Society (NCWSS 2018), Milwaukee, WI, USA, December 03, 2018 - December 06, 2018. (2018)