Publikationen von RE Ley

Chassaing, B.; Compher, C.; Bonhomme, B.; Liu, Q.; Tian, Y.; Walters, W.; Nessel, L.; Delaroque, C.; Hao, F.; Gershuni, V. et al.; Chau, L.; Ni, J.; Bewtra, M.; Albenberg, L.; Bretin, A.; McKeever, L.; Ley, R.; Patterson, A.; Wu, G.; Gewirtz, A.; Lewis, J.: Randomized Controlled-Feeding Study of Dietary Emulsifier Carboxymethylcellulose Reveals Detrimental Impacts on the Gut Microbiota and Metabolome. Gastroenterology 162 (3), S. 743 - 756 (2022)

Marsh, J.; Ley, R.: Microbiome engineering: Taming the untractable. Cell 185 (3), S. 416 - 418 (2022)

Suzuki, T.; Ley, R.: Microbes set the (woodrat) menu: Host genetics control diet-specific gut microbes. Proceedings of the National Academy of Sciences of the United States of America 119 (2), e2120125118 (2022)

Di Rienzi, S.; Johnson, E.; Waters, J.; Kennedy, E.; Jacobson, J.; Lawrence, P.; Wang, D.; Worgall, T.; Brenna, J.; Ley, R.: The microbiome affects liver sphingolipids and plasma fatty acids in a murine model of the Western diet based on soybean oil. The Journal of Nutritional Biochemistry 97, 108808 (2021)

Youngblut, N.; Reischer, G.; Dauser, S.; Maisch, S.; Walzer, C.; Stalder, G.; Farnleitner, A.; Ley, R.: Vertebrate host phylogeny influences gut archaeal diversity. Nature Microbiology 6 (11), S. 1443 - 1454 (2021)

Huus, K.; Ley, R.: Blowing Hot and Cold: Body Temperature and the Microbiome. mSystems 6 (5), e00707-21 (2021)

Youngblut, N.; Ley, R.: Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasets. PeerJ 9, e12198 (2021)

Du, X.; Ley, R.; Buck, A.: MicroRNAs and extracellular vesicles in the gut: new host modulators of the microbiome? microLife 2, uqab010 (2021)

Liu, X.; Sutter, J.; de la Cuesta-Zuluaga, J.; Waters, J.; Youngblut, N.; Ley, R.: Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis. International Journal of Systematic and Evolutionary Microbiology 71 (4), 004774 (2021)

Welter, D.; Ruaud, A.; Henseler, Z.; De Jong, H.; van Coeverden de Groot, P.; Michaux, J.; Gormezano, L.; Waters, J.; Youngblut, N.; Ley, R.: Free-Living, Psychrotrophic Bacteria of the Genus Psychrobacter Are Descendants of Pathobionts. mSystems 6 (2), e00258-21 (2021)

de la Cuesta-Zuluaga, J.; Spector, T.; Youngblut, N.; Ley, R.: Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human Gut. mSystems 6 (1), e00939-20 (2021)

Suzuki, T.; Ley, R.: The role of the microbiota in human genetic adaptation. Science 370 (6521), eaaz6827, S. 9 (2020)

Youngblut, N.; de la Cuesta-Zuluaga, J.; Reischer, G.; Dauser, S.; Schuster, N.; Walzer, C.; Stalder, G.; Farnleitner, A.; Ley, R.: Large-Scale Metagenome Assembly Reveals Novel Animal-Associated Microbial Genomes, Biosynthetic Gene Clusters, and Other Genetic Diversity. mSystems 5 (6), e01045-20 (2020)

Schmidt, V.; Enav, H.; Enav, H.; Spector, T.; Youngblut, N.; Ley, R.: Strain-Level Analysis of Bifidobacterium spp. from Gut Microbiomes of Adults with Differing Lactase Persistence Genotypes. mSystems 5 (5), e00911-20 (2020)

Walters, W.; Reyes, F.; Soto, G.; Reynolds, N.; Fraser, J.; Aviles, R.; Tribble, D.; Irvin, A.; Kelley-Loughnane, N.; Gutierrez, R. et al.; Riddle, M.; Ley, R.; Goodson, M.; Simons, M.: Epidemiology and associated microbiota changes in deployed military personnel at high risk of traveler's diarrhea. PLoS One 15 (8), e0236703 (2020)

Johnson, E.; Heaver, S.; Waters, J.; Kim, B.; Bretin, A.; Goodman, A.; Gewirtz, A.; Worgall, T.; Ley, R.: Sphingolipids produced by gut bacteria enter host metabolic pathways impacting ceramide levels. Nature Communications 11, 2471 (2020)

Mineeva, O.; Rojas-Carulla, M.; Ley, R.; Schölkopf, B.; Youngblut, N.: DeepMAsED: evaluating the quality of metagenomic assemblies. Bioinformatics 36 (10), S. 3011 - 3017 (2020)

de la Cuesta-Zuluaga, J.; Ley, R.; Youngblut, N.: Struo: a pipeline for building custom databases for common metagenome profilers. Bioinformatics 36 (7), S. 2314 - 2315 (2020)

Ruaud, A.; Esquivel-Elizondo, S.; de la Cuesta-Zuluaga, J.; Waters, J.; Angenent, L.; Youngblut, N.; Ley, R.: Syntrophy via Interspecies H2 Transfer between Christensenella and Methanobrevibacter Underlies Their Global Cooccurrence in the Human Gut. mBio 11 (1), e03235-19 (2020)

Clasen, S.; Ley, R.: Iron Deficiency Causes Wrinkles in Host-Commensal Relationships. Cell Metabolism 31 (1), S. 8 - 10 (2020)