Publications of DH Huson

Klein, J.; Ossowski, S.; Schneeberger, K.; Weigel, D.; Huson, D.: LOCAS: A Low Coverage Assembly Tool for Resequencing Projects. PLOS ONE 6 (8), e23455 (2011)

Schneeberger, K.; Ossowski, S.; Ott, F.; Klein, J.; Wang, X.; Lanz, C.; Smith, L.; Cao, J.; Fitz, J.; Warthmann, N. et al.; Henz, S.; Huson, D.; Weigel, D.: Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proceedings of the National Academy of Sciences of the United States of America 108 (25), pp. 10249 - 10254 (2011)

Fenselau de Felippes, F.; Schneeberger, K.; Dezulian, T.; Huson, D.; Weigel, D.: Evolution of Arabidopsis thaliana microRNAs from random sequences. RNA: A Publication of the RNA Society 14 (12), pp. 2455 - 2459 (2008)

Palatnik, J.; Wollmann, H.; Schommer, C.; Schwab, R.; Boisbouvier, J.; Rodriguez, R.; Warthmann, N.; Allen, E.; Dezulian, T.; Huson, D. et al.; Carrington , J.; Weigel, D.: Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319. Developmental Cell 13 (1), pp. 115 - 125 (2007)

Dezulian, T.; Schaefer, M.; Wiese, R.; Weigel, D.; Huson, D.: CrossLink: visualization and exploration of sequence relationships between (micro) RNAs. Nucleic Acids Research (London) 34 (Web Server issue), pp. W400 - W404 (2006)

Dezulian, T.; Remmert, M.; Palatnik, J.; Weigel, D.; Huson, D.: Identification of plant microRNA homologs. Bioinformatics 22 (3), pp. 359 - 360 (2006)

Henz, S.; Huson, D.; Auch, A.; Nieselt-Struwe, K.; Schuster, S.: Whole-genome prokaryotic phylogeny. Bioinformatics 21 (10), pp. 2329 - 2335 (2005)

Eppinger, M.; Baar, C.; Raddatz, G.; Huson, D.; Schuster, S.: Comparative analysis of four Campylobacterales. Nature Reviews Microbiology 2 (11), pp. 872 - 885 (2004)

Bağci, C.; Abrecht, B.; Huson, D.: MAIRA: Protein-based Analysis of MinION Reads on a Laptop. In: Metagenomic Data Analysis, pp. 223 - 234 (Ed. Mitra, S.). Humana Press, NewYork, NY, USA (2023)

Gautam, A.; Zeng, W.; Huson, D.: DIAMOND + MEGAN Microbiome Analysis. In: Metagenomic Data Analysis, pp. 107 - 131 (Ed. Mitra, S.). Humana Press, NewYork, NY, USA (2023)

Bağci, C.; Beier, S.; Górska, A.; Huson, D.: Introduction to the Analysis of Environmental Sequences: Metagenomics with MEGAN. In: Evolutionary Genomics: Statistical and Computational Methods, pp. 591 - 604. Humana Press, New York, NY, USA (2019)

Huson, D.; Kohlbacher, O.; Lupas, A.; Nieselt, K.; Zell, A. (Eds.): German Conference on Bioinformatics GCB 2006 (Gesellschaft für Informatik: GI-Edition / Proceedings, 83). German Conference on Bioinformatics (GCB 2006), Tübingen, Germany, September 19, 2006 - September 22, 2006. Gesellschaft für Informatik e.V., Bonn, Germany (2006)

Gautam, A.; Huson, D.: Using BinAC to analyze microbiome samples. In: 8th bwHPC Symposium, pp. 7 - 17 (Ed. Weyers, C.-M.). 8th bwHPC Symposium, November 28, 2022. (2022)

Beier, S.; Górska, A.; Grupp, P.; Harbig, T.; Flade, I.; Huson, D.: Bioinformatics support for the Tübiom community gut microbiome project. 24th German Conference on Bioinformatics (GCB 2016), Berlin, Germany, September 12, 2016 - September 16, 2016. PeerJ, (2016)

Delgado Friedrichs, O.; Halpern, A.; Lippert, R.; Rausch, C.; Schuster, S.; Huson, D.: Syntenic Layout of Two Assemblies of Related Genomes. In: German Conference on Bioinformatics: GCB 2004, P053, pp. 3 - 12 (Eds. Giegerich, R.; Stoye, J.). German Conference on Bioinformatics (GCB 2004), Bielefeld, Germany, October 04, 2004 - October 06, 2004. Gesellschaft für Informatik e.V., Bonn, Germany (2004)

Botta, C.; Tsoureki, D.; Gautam, A.; Patz, S.; Pissaridi, K.; Ferrocino, I.; Franciosa, I.; Cocolin, L.; Huson, D.; Rantsiou, K.: How can DNA-based omics effectively improve microbiological quality control? An explorative study applied to infant food production. In 28th ICFMH International Conference: FoodMicro 2024, 4.4, pp. 62 - 63. 28th ICFMH International Conference: FoodMicro 2024, Burgos, Spain, July 08, 2024 - July 11, 2024. (2024)

Botta, C.; Tsoureki, D.; Gautam, A.; Patz, S.; Pissaridi, K.; Ferrocino, I.; Cocolin, L.; Huson, D.; Rantsiou, K.: The pros and cons of tracking the microbial contamination in infant food processing chain through amplicon sequencing and metagenomics. In Food System Microbiomes 2024, S5-ST03, p. 50. Food System Microbiomes 2024, Torino, Italy, May 14, 2024 - May 17, 2024. (2024)

Patz, S.; Gautam, A.; Becker, M.; Ruppel, S.; Huson, D.: From application of the plant growth-promoting traits ontology towards a sustainable plant production. In Molecular Plant-Microbe Interactions, 32 (3 Supplement), p. 4. 2021 IS-MPMI Congress: Plant–Microbe Interactions in the Environment: Navigating a Complex World, December 01, 2021 - December 02, 2021. APS Press, St. Paul, MN, USA (2021)

Albrecht, B.; Bağci, C.; Huson, D.: MAIRA: real-time taxonomic and functional analysis of long reads on a laptop. In BMC Bioinformatics, 21 (Supplement 13), 390. 18th Asia Pacific Bioinformatics Conference (APBC 2020), Seoul, South Korea, August 18, 2020 - August 20, 2020. BioMed Central (2020)

Huson, D.; Albrecht, B.; Bağci, C.; Bessarab, I.; Górska, A.; Jolic, D.; Williams , R.: MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs. In 26th Conference on Intelligent Systems for Molecular Biology (ISMB 2018). 26th Conference on Intelligent Systems for Molecular Biology (ISMB 2018), Chicago, IL, USA, July 06, 2018 - July 10, 2018. (2018)