Publications of J Pereira
All genres
Journal Article (11)
1.
Journal Article
9, 895496 (2022)
New β-Propellers Are Continuously Amplified From Single Blades in all Major Lineages of the β-Propeller Superfamily. Frontiers in Molecular Biosciences 2.
Journal Article
89 (12), pp. 1752 - 1769 (2021)
Assessing the utility of CASP14 models for molecular replacement. Proteins: Structure, Function, and Bioinformatics 3.
Journal Article
89 (12), pp. 1687 - 1699 (2021)
High-accuracy protein structure prediction in CASP14. Proteins: Structure, Function, and Bioinformatics 4.
Journal Article
77 (9), pp. 1116 - 1126 (2021)
How do I get the most out of my protein sequence using bioinformatics tools? Acta Crystallographica Section D: Structural Biology 5.
Journal Article
118 (31), e2104059118 (2021)
Gram-negative outer-membrane proteins with multiple β-barrel domains. Proceedings of the National Academy of Sciences of the United States of America 6.
Journal Article
478 (10), pp. 1885 - 1890 (2021)
The breakthrough in protein structure prediction. Biochemical Journal 7.
Journal Article
433 (11), 166943 (2021)
GCsnap: Interactive Snapshots for the Comparison of Protein-Coding Genomic Contexts. Journal of Molecular Biology 8.
Journal Article
36 (24), pp. 5618 - 5622 (2021)
The VCBS superfamily forms a third supercluster of β-propellers that includes tachylectin and integrins. Bioinformatics 9.
Journal Article
34 (23), pp. 3961 - 3965 (2018)
The ancestral KH peptide at the root of a domain family with three different folds. Bioinformatics 10.
Journal Article
10 (10), pp. 2759 - 2765 (2018)
The Origin of Mitochondria-Specific Outer Membrane beta-Barrels from an Ancestral Bacterial Fragment. Genome Biology and Evolution 11.
Journal Article
10 (10), pp. 2759 - 2765 (2018)
The Origin of Mitochondria-Specific Outer Membrane β-Barrels from an Ancestral Bacterial Fragment. Genome Biology and Evolution Meeting Abstract (1)
12.
Meeting Abstract
Ribosomal proteins as documents of the transition from unstructured polypeptides to folded proteins. In CAS Conference 2018: Molecular Origins of LIFE, p. 19. CAS Conference 2018: Molecular Origins of LIFE, München, Germany, October 11, 2018 - October 12, 2018. (2018)
Poster (2)
13.
Poster
On the origins of the protein world: A large-scale computational approach to study the emergence of the first autonomously folding proteins. The Molecular Origins of Life Conference 2020, München, Germany (2020)
14.
Poster
On the origins of the protein world: a computational approach to study the emergence of the first autonomously folding proteins. CAS Conference 2018: Molecular Origins of LIFE (MOM 2018), München, Germany (2018)
Preprint (1)
15.
Preprint
Outer membrane beta-barrel structure prediction through the lens of AlphaFold2. (submitted)