Publications of M ElGamacy

Maksymenko, K.; Maurer, A.; Aghaallaei, N.; Barry, C.; Borbarán-Bravo, N.; Ullrich, T.; Dijkstra, T.; Hernandez-Alvarez, B.; Müller, P.; Lupas, A. et al.; Skokowa, J.; ElGamacy, M.: The design of functional proteins using tensorized energy calculations. Cell Reports Methods 3 (8), 100560 (2023)

Skokowa, J.; Hernandez Alvarez, B.; Coles, M.; Ritter, M.; Nasri, M.; Haaf, J.; Aghaallaei, N.; Xu, Y.; Mir, P.; Krahl, A.-C. et al.; Rogers, K.; Maksymenko, K.; Bajoghli, B.; Welte, K.; Lupas, A.; Müller, P.; ElGamacy, M.: A topological refactoring design strategy yields highly stable granulopoietic proteins. Nature Communications 13 (1), 2948 (2022)

ElGamacy, M.; Hernandez Alvarez, B.: Expanding the versatility of natural and de novo designed coiled coils and helical bundles. Current Opinion in Structural Biology 68, pp. 224 - 234 (2021)

Hernandez Alvarez, B.; Skokowa, J.; Coles, M.; Mir, P.; Nasri, M.; Weidmann, L.; Rogers, K.; Welte, K.; Lupas, A.; Müller, P. et al.; ElGamacy, M.: Design of novel granulopoietic proteins by topological rescaffolding. PLoS Biology 18 (12), e3000919 (2020)

ElGamacy, M.; Riss, M.; Zhu, H.; Truffault, V.; Coles, M.: Mapping Local Conformational Landscapes of Proteins in Solution. Structure 27 (5), pp. 853 - 865 (2019)

ElGamacy, M.; Coles, M.; Lupas, A.: Asymmetric protein design from conserved supersecondary structures. Journal of Structural Biology 204 (3), pp. 380 - 387 (2018)

Irwin, B.; Vukovič, S.; Payne, M.; ElGamacy, M.; Chau, P.-L.: Prediction of GABARAP interaction with the GABA type A receptor. Proteins: Structure, Function, and Bioinformatics 86 (12), pp. 1251 - 1264 (2018)

ElGamacy, M.; Coles, M.; Ernst, P.; Zhu, H.; Hartmann, M.; Plückthun, A.; Lupas, A.: An Interface-Driven Design Strategy Yields a Novel, Corrugated Protein Architecture. ACS Synthetic Biology 7 (9), pp. 2226 - 2235 (2018)

McCarthy, N.; Brooks, N.; Tyler, A.; ElGamacy, M.; Welche, P.; Payne, M.; Chau, P.-L.: A combined X-ray scattering and simulation study of halothane in membranes at raised pressures. Chemical Physics Letters 671, pp. 21 - 27 (2017)

Wietaska, J.; Welche, P.; ElGamacy, M.; Csanyi, G.; Payne, M.; Chau, P.-L.: Isoflurane does not aggregate inside POPC bilayers at high pressure: Implications for pressure reversal of general anaesthesia. Chemical Physics Letters 638, pp. 116 - 121 (2015)

ElGamacy, M.; Van Meervelt, L.: A fast topological analysis algorithm for large-scale similarity evaluations of ligands and binding pockets. Journal of Cheminformatics 7, 42 (2015)

ElGamacy, M.: Accelerating therapeutic protein design. In: Advances in Protein Chemistry and Structural Biology, Vol. 130. Academic Press, New York, NY, USA (2022)

Borbaran Bravo, N.; Doll, L.; Deordieva, E.; Bräuning, S.; Dannenmann, B.; ElGamacy, M.; Zakharova, V.; Lengerke, C.; Zeidler, C.; Welte, K. et al.; Shcherbina, A.; Skokowa, J.; Klimiankou, M.: A New Hereditary Syndrome with Severe Neutropenia and Neurological Involvement Caused by the Autosomal Recessive COPZ1 Mutation. In HemaSphere: open access journal of the European Hematology Association, 7 (Supplement 3), e9362349, pp. 180 - 181. 28th Congress of the European Hematology Association (EHA 2023), Frankfurt a.M., Germany, June 08, 2023 - June 15, 2023. Wolters Kluwer Health, Philadelphia, Pennsylvania, USA (2023)

Maksymenko, K.; Hernandez Alvarez, B.; Ullrich, T.; Skokowa, J.; Lupas, A.; ElGamacy, M.: Damietta: A Tensorised Protein Design Engine, and Its Application in Therapeutic Protein Design. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 22. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)

Maksymenko, K.; Skokowa, J.; Müller, P.; Lupas, A.; ElGamacy, M.: Protein design of growth factor inhibitors. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 41. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)

Ullrich, T.; Skokowa, J.; Lupas, A.; ElGamacy, M.: Computational design of granulopoietic proteins. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 62. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)

Borbarán-Bravo, N.; Deordieva, E.; Bräuning, S.; Dannenmann, B.; Doll, L.; ElGamacy, M.; Zeidler, C.; Bajoghly, B.; Maschan, A.; Shcherbina, A. et al.; Welte, K.; Skokowa, J.; Klimiankou, M.: A new inherited syndrome with severe neutropenia and neurological involvement due to autosomal recessive COPZ1 mutation. In Klinische Pädiatrie, 234 (03), 0027, p. 180. 34. Jahrestagung der Kind-Philipp-Stiftung für pädiatrisch onkologische Forschung, Wilsede, Germany, June 01, 2022 - June 04, 2022. Thieme, Stuttgart, Germany (2022)

ElGamacy, M.: De novo design of new granulopoietic proteins to treat neutropenia. In EuNet-INNOCHRON 5th Management Committee Meeting / 3rd Working Groups Meeting. EuNet-INNOCHRON 5th Management Committee Meeting / 3rd Working Groups Meeting, Tübingen, Germany, May 19, 2022 - May 20, 2022. (2022)

ElGamacy, M.; Ullrich, T.; Maksymenko, K.; Lupas, A.; Hernandez, B.; Skokowa, J.: De novo design of cytokines, antikines, and novokines. In Klinische Pädiatrie, 234 (03), 0051, p. 185. 34. Jahrestagung der Kind-Philipp-Stiftung für pädiatrisch onkologische Forschung, Wilsede, Germany, June 01, 2022 - June 04, 2022. Thieme, Stuttgart, Germany (2022)

Maksymenko, K.; Skokowa, J.; Lupas, A.; Aghaallaei, N.; Müller, P.; ElGamacy, M.: De novo design of growth factor inhibiting proteins. In Klinische Pädiatrie, 234 (03), pp. 185 - 186. 34. Jahrestagung der Kind-Philipp-Stiftung für pädiatrisch onkologische Forschung, Wilsede, Germany, June 01, 2022 - June 04, 2022. Thieme, Stuttgart, Germany (2022)