Goodrich, J.; Davenport, E.; Clark, A.; Ley, R.: The Relationship Between the Human Genome and Microbiome Comes into View. Annual Review of Genetics 51, pp. 413 - 433 (2017)

Reddivari, L.; Veeramachaneni, D.; Walters, W.; Lozupone, C.; Palmer, J.; Hewage, M.; Bhatnagar, R.; Amir, A.; Kennett, M.; Knight, R. et al.; Vanamala, J.: Perinatal Bisphenol A Exposure Induces Chronic Inflammation in Rabbit Offspring via Modulation of Gut Bacteria and Their Metabolites. mSystems 2 (5), e00093-17 (2017)

Bautista, M.; Black, J.; Youngblut, N.; Whitaker, R.: Differentiation and Structure in Sulfolobus islandicus Rod-Shaped Virus Populations. Viruses 9 (5), 120 (2017)

McGavigan, A.; Henseler, Z.; Garibay, D.; Butler, S.; Jayasinghe, S.; Ley, R.; Davisson, R.; Cummings, B.: Vertical sleeve gastrectomy reduces blood pressure and hypothalamic endoplasmic reticulum stress in mice. Disease Models & Mechanisms 10 (3), pp. 235 - 243 (2017)

Webster, K.; Schach, U.; Ordaz, A.; Steinfeld, J.; Draper, B.; Siegfried, K.: Dmrt1 is necessary for male sexual development in zebrafish. Developmental Biology 422 (1), pp. 33 - 46 (2017)

Johnson, E.; Heaver, S.; Walters, W.; Ley, R.: Microbiome and metabolic disease: revisiting the bacterial phylum Bacteroidetes. Journal of Molecular Medicine 95 (1), pp. 1 - 8 (2017)

Ley, R.; Tissenbaum, H.; Klip, A.; Han, J.-D.; Coleman, R.; Akhtar, A.; Aouadi, M.; Anderson, R.; Randolph, G.; White, E.: Women in Metabolism: Part IV. Cell Metabolism 24 (6), pp. 767 - 770 (2016)

Davenport, E.; Goodrich, J.; Bell, J.; Spector, T.; Ley, R.; Clark, A.: ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins. BMC Genomics 17, 941 (2016)

Singh, J.; Johnson, R.; Schlett, C.; Elassal, E.; Crawford, K.; Mor, D.; Lanier, J.; Law, N.; Walters, W.; Teneza-Mora, N. et al.; Bennett, J.; Hall, E.; Millar, E.; Ellis, M.; Merrell, D.: Multi-Body-Site Microbiome and Culture Profiling of Military Trainees Suffering from Skin and Soft Tissue Infections at Fort Benning, Georgia. mSphere 1 (5), e00232-16 (2016)

Beaumont, M.; Goodrich, J.; Jackson, M.; Yet, I.; Davenport, E.; Vieira-Silva, S.; Debelius, J.; Pallister, T.; Mangino, M.; Raes, J. et al.; Knight, R.; Clark, A.; Ley, R.; Spector, T.; Bell, J.: Heritable components of the human fecal microbiome are associated with visceral fat. Genome Biology 17, 189 (2016)

Ley, R.; Gewirtz, A.: Corralling Colonic Flagellated Microbiota. The New England Journal of Medicine: NEJM / Publ. by the Massachusetts Medical Society 735 (1), pp. 85 - 87 (2016)

Goodrich, J.; Davenport, E.; Beaumont, M.; Kackson, M.; Knight, R.; Ober, C.; Spector, T.; Bell, J.; Clark, A.; Ley, R.: Genetic Determinants of the Gut Microbiome in UK Twins. Cell Host & Microbe 19 (5), pp. 731 - 743 (2016)

Goodrich, J.; Davenport, E.; Waters, J.; Clark, A.; Ley, R.: Cross-species comparisons of host genetic associations with the microbiome. Science 352 (6285), pp. 532 - 535 (2016)

Ley, R.: Gut microbiota in 2015: Prevotella in the gut: choose carefully. Nature Reviews Gastroenterology & Hepatology 13 (2), pp. 69 - 70 (2016)

Jin, Z.; Di Rienzi, S.; Werner, J.; Angenent, L.; Dangl, J.; Fowle, D.; Ley, R.: Novel Rhizosphere Soil Alleles for the Enzyme 1-Aminocyclopropane-1-Carboxylate Deaminase Queried for Function with an In Vivo Competition Assay. Applied and Environmental Microbiology 82 (4), pp. 1050 - 1059 (2015)

Barnett, S.; Youngblut, N.; Buckley, D.: Data Analysis for DNA Stable Isotope Probing Experiments Using Multiple Window High-Resolution SIP. In: Methods in Molecular Biology. Springer, US (2019)

Marsh, J.; Hayward, R.; Shetty, A.; Mahurkar, A.; Humphrys, M.; Myers, G.: Dual RNA-Seq of Chlamydia and Host Cells. In: Methods in Molecular Biology, Vol. 2042. Springer, US (2019)

Schmidt, V.; Ley, R.: The African Microbiome: Clues of human adaptation and population history. In: Modern human origins and dispersal, pp. 239 - 260 (Eds. Sahle, Y.; Reyes-Centeno, H.; Bentz, C.). Kerns, Tübingen, Germany (2019)

Bryson, A.; Chatterjee, M.; Holdermann, I.; Kirk, C.; Kisker, J.; Simic, I.; Ley, R.; Marsh, J.: Human Gut Microbiome Engineering: Unlocking the Genetic Vault. In SeaWheat COST Action Workshop: Advances in Biome Research of Ulva, p. 32. SeaWheat COST Action Workshop: Advances in Biome Research of Ulva, Faro, Portugal, March 18, 2025 - March 19, 2025. (2025)

Enav, H.: Strain tracking in complex microbiomes using synteny analysis reveals per-species modes of evolution. In 2024 Microbes: Connecting Environment and Health, p. 13. 2024 Microbes: Connecting Environment and Health, Berlin, Germany, October 01, 2024 - October 02, 2024. (2024)