Software
Protein Evolution
| Title | Description | Download | |
| AlnEdit | Alignment editor (Fasta, Clustal, Stockholm, Phylip, Treecon format) | FTP | |
| BLATview | Graphical display of BLAT results | FTP | |
| CLANS | Graph layout of protein sequence pairwise similarities in 2D or 3D | FTP | |
| HH-suite | Sensitive sequence searching by HMM-HMM comparision | FTP | |
| JTreeview | Tree viewer (Newick format) | FTP | |
| PHAT | Phylome analysis tool (part of PhyloGenie) | FTP | |
| PhyloGenie | Phylome generation and analysis tool | FTP |