Publications of D Weigel

Arce, A.; Mencia, R.; Cambiagno, D.; Lang, P.; Liu, C.; Burbano, H.; Weigel, D.; Manavella, P.: Polymorphic Inverted Repeats near coding genes impact chromatin topology and phenotypic traits in Arabidopsis thaliana. Cell Reports 42 (1), 112029 (2023)

Kreiner, J.; Latorre, S.; Burbano, H.; Stinchcombe, J.; Otto, S.; Weigel, D.; Wright, S.: Rapid weed adaptation and range expansion in response to agriculture over the past two centuries. Science 378 (6624), pp. 1079 - 1085 (2022)

Lundberg, D.; de Pedro Jové, R.; Na Ayutthaya, P.; Karasov, T.; Shalev, O.; Poersch, K.; Ding, W.; Bollmann-Giolai, A.; Bezrukov, I.; Weigel, D.: Contrasting patterns of microbial dominance in the Arabidopsis thaliana phyllosphere. Proceedings of the National Academy of Sciences of the United States of America 119 (52), e2211881119 (2022)

Srikant, T.; Yuan, W.; Berendzen, K.; Contreras Garrido, A.; Drost, H.-G.; Schwab, R.; Weigel, D.: Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation. Genome Biology 23 (1), 263 (2022)

Rabanal, F.; Gräff, M.; Lanz, C.; Fritschi, K.; Llaca, V.; Lang, M.; Carbonell-Bejerano, P.; Henderson, I.; Weigel, D.: Pushing the limits of HiFi assemblies reveals centromere diversity between two Arabidopsis thaliana genomes. Nucleic Acids Research (London) 50 (21), gkac1115, pp. 12309 - 12327 (2022)

Wibowo, A.; Antunez-Sanchez, J.; Dawson, A.; Price, J.; Meehan, C.; Wrightsman, T.; Collenberg, M.; Bezrukov, I.; Becker, C.; Benhamed, M. et al.; Weigel, D.; Gutierrez-Marcos, J.: Predictable and stable epimutations induced during clonal plant propagation with embryonic transcription factor. PLoS Genetics 18 (11), e1010479 (2022)

Hüther, P.; Hagmann, J.; Nunn, A.; Kakoulidou, I.; Pisupati, R.; Langenberger, D.; Weigel, D.; Johannes, F.; Schultheiss, S.; Becker, C.: MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data. Quantitative Plant Biology 3, e19 (2022)

Nunn, A.; Rodríguez-Arévalo, I.; Tandukar, Z.; Frels, K.; Contreras-Garrido, A.; Carbonell-Bejerano, P.; Zhang, P.; Ramos Cruz, D.; Jandrasits, K.; Lanz, C. et al.; Brusa, A.; Mirouze, M.; Dorn, K.; Galbraith, D.; Jarvis, B.; Sedbrook, J.; Wyse, D.; Otto, C.; Langenberger, D.; Stadler, P.; Weigel, D.; Marks, M.; Anderson, J.; Becker, C.; Chopra, A.: Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates. Plant Biotechnology Journal 20 (5), pp. 944 - 963 (2022)

Shalev, O.; Ashkenazy, H.; Neumann, M.; Weigel, D.: Commensal Pseudomonas protect Arabidopsis thaliana from a coexisting pathogen via multiple lineage-dependent mechanisms. The ISME Journal 16 (5), pp. 1235 - 1244 (2022)

Shalev, O.; Karasov, T.; Lundberg, D.; Ashkenazy, H.; Ayutthaya, P.; Weigel, D.: Commensal Pseudomonas strains facilitate protective response against pathogens in the host plant. Nature Ecology & Evolution 6 (4), pp. 383 - 396 (2022)

van der Zee, M.; Whiting, J.; Paris, J.; Bassar, J.; Travis, J.; Weigel, D.; Reznick, D.; Fraser, B.: Rapid genomic convergent evolution in experimental populations of Trinidadian guppies ( Poecilia reticulata). Evolution Letters 6 (2), pp. 149 - 161 (2022)

Fan, L.; Fröhlich, K.; Melzer, E.; Pruitt, R.; Albert, I.; Zhang, L.; Joe, A.; Hua, C.; Song, Y.; Albert, M. et al.; Kim, S.-T.; Weigel, D.; Zipfel, C.; Chae, E.; Gust, A.; Nürnberger, T.: Genotyping-by-sequencing-based identification of Arabidopsis pattern recognition receptor RLP32 recognizing proteobacterial translation initiation factor IF1. Nature Communications 13 (1), 1294 (2022)

Monroe, J.; Srikant, T.; Carbonell-Bejerano, P.; Becker, C.; Lensink, M.; Exposito-Alonso, M.; Klein, M.; Hildebrandt, J.; Neumann, M.; Kliebenstein, D. et al.; Weng, M.-L.; Imbert, E.; Ågren, J.; Rutter, M.; Fenster, C.; Weigel, D.: Mutation bias reflects natural selection in Arabidopsis thaliana. Nature 602 (7895), pp. 101 - 105 (2022)

Kreiner, J.; Sandler, G.; Stern, A.; Tranel, P.; Weigel, D.; Stinchcombe, J.; Wright, S.: Repeated origins, widespread gene flow, and allelic interactions of target-site herbicide resistance mutations. eLife 11, e70242 (2022)

Shirsekar, G.; Devos, J.; Latorre, S.; Blaha, A.; Queiroz Dias, M.; González Hernando, A.; Lundberg, D.; Burbano, H.; Fenster, C.; Weigel, D.: Multiple Sources of Introduction of North American Arabidopsis thaliana from across Eurasia. Molecular Biology and Evolution 38 (12), pp. 5328 - 5344 (2021)

Kreiner, J.; Tranel, P.; Weigel, D.; Stinchcombe, J.; Wright, S.: The genetic architecture and population genomic signatures of glyphosate resistance in Amaranthus tuberculatus. Molecular Ecology 30 (21), pp. 5373 - 5389 (2021)

Pruitt, R.; Locci, F.; Wanke, F.; Zhang, L.; Saile, S.; Joe, A.; Karelina, D.; Hua, C.; Fröhlich, K.; Wan, W.-L. et al.; Hu, M.; Rao, S.; Stolze, S.; Harzen, A.; Gust, A.; Harter, K.; Joosten, M.; Thomma, B.; Zhou, J.-M.; Dangl, J.; Weigel, D.; Nakagami, H.; Oecking, C.; Kasmi, F.; Parker, J.; Nürnberger, T.: The EDS1–PAD4–ADR1 node mediates Arabidopsis pattern-triggered immunity. Nature 598 (7881), pp. 495 - 499 (2021)

Vogt, F.; Shirsekar, G.; Weigel, D.: vcf2gwas: python API for comprehensive GWAS analysis using GEMMA. Bioinformatics 38 (3), pp. 839 - 840 (2021)

Lei, L.; Weigel, D.: One Hundred Years of Hybrid Necrosis: Hybrid Autoimmunity as a Window into the Mechanisms and Evolution of Plant-Pathogen Interactions. Annual Review of Phytopathology 59, pp. 213 - 237 (2021)

Lundberg, D.; Ayutthaya, P.; Strauß, A.; Shirsekar, G.; Lo, W.-S.; Lahaye, T.; Weigel, D.: Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition. eLife 10, e66186 (2021)