Publications of C Bağci

Gautam, A.; Felderhoof, H.; Bağci, C.; Huson, D.: Using AnnoTree to Get More Assignments, Faster, in DIAMOND+MEGAN Microbiome Analysis. mSystems 7 (1), e0140821 (2022)

Esquivel-Elizondo, S.; Bağci, C.; Temovska, M.; Jeon, B.; Bessarab, I.; Williams, R.; Huson, D.; Angenent, L.: The Isolate Caproiciproducens sp. 7D4C2 Produces n-Caproate at Mildly Acidic Conditions From Hexoses: Genome and rBOX Comparison With Related Strains and Chain-Elongating Bacteria. Frontiers in Microbiology 11, 33584563 (2021)

Arumugam, K.; Bağci, C.; Bessarab, I.; Beier, S.; Buchfink, B.; Górska, A.; Qiu, G.; Huson, D.; Williams, R.: Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data. Microbiome 7, 61 (2019)

Huson, D.; Albrecht, B.; Bağci, C.; Bessarab, I.; Górska, A.; Jolic, D.; Williams , R.: MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs. Biology Direct 13, 6 (2018)

Bağci, C.; Abrecht, B.; Huson, D.: MAIRA: Protein-based Analysis of MinION Reads on a Laptop. In: Metagenomic Data Analysis, pp. 223 - 234 (Ed. Mitra, S.). Humana Press, NewYork, NY, USA (2023)

Bağci, C.; Beier, S.; Górska, A.; Huson, D.: ntroduction to the Analysis of Environmental Sequences: Metagenomics with MEGAN. In: Evolutionary Genomics: Statistical and Computational Methods, pp. 591 - 604. Humana Press, New York, NY, USA (2019)

Albrecht, B.; Bağci, C.; Huson, D.: MAIRA: real-time taxonomic and functional analysis of long reads on a laptop. In BMC Bioinformatics, 21 (Supplement 13), 390. 18th Asia Pacific Bioinformatics Conference (APBC 2020), Seoul, South Korea, August 18, 2020 - August 20, 2020. BioMed Central (2020)

Huson, D.; Albrecht, B.; Bağci, C.; Bessarab, I.; Górska, A.; Jolic, D.; Williams , R.: MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs. In 26th Conference on Intelligent Systems for Molecular Biology (ISMB 2018). 26th Conference on Intelligent Systems for Molecular Biology (ISMB 2018), Chicago, IL, USA, July 06, 2018 - July 10, 2018. (2018)

Bagci, C.: Efficient Algorithms and Pipelines for Microbiome Analysis. Dissertation, Eberhard-Karls-Universität, Tübingen, Germany (2023)