Publications of S Vorbrugg

Xian, W.; Bezrukov, I.; Bao, Z.; Vorbrugg, S.; Gautam, A.; Weigel, D.: TIPPo: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with High-Fidelity Data. Molecular Biology and Evolution 42 (1), msae247 (2025)

Vorbrugg, S.; Bezrukov, I.; Bao, Z.; Weigel, D.: Gretl: Variation GRaph Evaluation TooLkit. Bioinformatics 41 (1), btae755 (2024)

Garrison, E.; Guarracino, A.; Heumos, S.; Villani, F.; Bao, Z.; Tattini, T.; Hagmann, J.; Vorbrugg, S.; Marco-Sola, S.; Kubica, C. et al.; Ashbrook, G.; Thorell, K.; Rusholme-Pilcher, R.; Liti, G.; Rudbeck, E.; Golicz, A.; Nahnsen, S.; Yang, Z.; Mwaniki, M.; Nobrega, F.; Wu, Y.; Chen, H.; de Ligt, J.; Sudmant, P.; Huang, S.; Weigel, D.; Soranzo, N.; Colonna, V.; Williams, R.; Prins, P.: Building pangenome graphs. Nature Methods 21 (11), pp. 2008 - 2012 (2024)

Bao, Z.; Guarracino, A.; Rabanal, F.; Vorbrugg, S.; Xian, W.; Garrison, E.; Weigel, D.: Understanding mutational processes from Arabidopsis pangenome graphs. In 2025 Meeting on Biology of Genomes, p. 30. 38th Annual Meeting on Biology of Genomes 2025, Cold Spring Harbor, NY, USA, May 06, 2025 - May 10, 2025. (2025)

Bao, Z.; Rabanal, F.; Guarracino, A.; Vorbrugg, S.; Xian, W.; Movilli, A.; Teasdale, L.; Murray, K.; Shirsekar, G.; Tao, Y. et al.; Lucke, M.; Garrison, E.; Weigel, D.: Understanding mutational processes from Arabidopsis pangeome graphs. In 34th International Conference on Arabidopsis Research (ICAR 2024), C12-2, p. 156. 34th International Conference on Arabidopsis Research (ICAR 2024), San Diego, CA, USA, July 15, 2024 - July 19, 2024. (2024)

Bao, Z.; Vorbrugg, S.; Huang, S.; Weigel, D.: Benchmarking graph building pipeline on plant genome assemblies. In 33rd International Conference on Arabidopsis Research (ICAR 2023), WS02-05. 33rd International Conference on Arabidopsis Research (ICAR 2023), Chiba, Japan, June 05, 2023 - June 06, 2023. (2023)

Vorbrugg, S.: Effect of reference genome choice on variant calling. Master, 78 pp., Eberhard-Karls-Universität, Tübingen, Germany (2019)

Xian, W.; Bao, Z.; Vorbrugg, S.; Tao, Y.; Movilli, A.; Bezrukov, I.; Weigel, D.: The structure of mitochondrial genomes is associated with geography in Arabidopsis thaliana. (submitted)

The 1001 Genomes Plus Consortium; Alonso-Blanco, C.; Ashkenazy, H.; Baduel, P.; Bao, Z.; Becker, C.; Caillieux, E.; Colot, V.; Crosbie, D.; De Oliveira, L. et al.; Fitz, J.; Fritschi, K.; Grigoreva, E.; Guo, Y.; Habring, A.; Henderson, I.; Hou, X.-H.; Hu, Y.; Igolkina, A.; Kang, M.; Kemen, E.; Kersey, P.; Kornienko, A.; Lian, Q.; Liu, H.; Liu, J.; Lucke, M.; Mayjonade, B.; Mercier, R.; Mollá Morales, A.; Movilli, A.; Murray, K.; Naish, M.; Nordborg, M.; Rabanal, F.; Roux, F.; Schandry, N.; Schneeberger, K.; Schwab, R.; Shirsekar, G.; Sushko, S.; Tao, Y.; Teasdale, L.; Vorbrugg, S.; Weigel, D.; Xian, W.: The 1001G+ project: A curated collection of Arabidopsis thaliana long-read genome assemblies to advance plant research. (submitted)

Vorbrugg, S.; Bezrukov, I.; Bao, Z.; Xian, W.; Weigel, D.: Gfa2bin enables graph-based GWAS by converting genome graphs to pan-genomic genotypes. (submitted)

Xian, W.; Bezrukov, I.; Bao, Z.; Vorbrugg, S.; Gautam, A.; Weigel, D.: TIPP_plastid: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with HiFi Data. (submitted)

Igolkina, A.; Vorbrugg, S.; Rabanal, F.; Liu, H.-J.; Ashkenazy, H.; Kornienko, A.; Fitz, J.; Collenberg, M.; Kubica, C.; Mollá Morales, A. et al.; Jaegle, B.; Wrightsman, T.; Voloshin, V.; Llaca, V.; Nizhynska, V.; Reichardt, I.; Lanz, C.; Bemm, F.; Flood, B.; Nemomissa, S.; Hancock, A.; Guo, Y.-L.; Kersey, P.; Weigel, D.; Nordborg, M.: Towards an unbiased characterization of genetic polymorphism. (submitted)