Publications of W Xian

Mencia, R.; Arce, A.; Houriet, C.; Xian, W.; Contreras, A.; Shirsekar, G.; Weigel, D.; Manavella, P.: Transposon-triggered epigenetic chromatin dynamics modulate EFR-related pathogen response. Nature Structural & Molecular Biology 32 (1), pp. 199 - 211 (2025)

Xian, W.; Bezrukov, I.; Bao, Z.; Vorbrugg, S.; Gautam, A.; Weigel, D.: TIPPo: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with High-Fidelity Data. Molecular Biology and Evolution 42 (1), msae247 (2025)

Liu, T.; Liu, H.; Xian, W.; Liu, Z.; Yuan, Y.; Fan, J.; Xiang, S.; Yang, X.; Liu, Y.; Liu, S. et al.; Zhang, M.; Shen, Y.; Jiao, Y.; Cheng, S.; Doyle, J.; Xie, F.; Li, J.; Tian, Z.: Duplication and sub-functionalization of flavonoid biosynthesis genes plays important role in Leguminosae root nodule symbiosis evolution. Journal of Integrative Plant Biology 66 (10), pp. 2191 - 2207 (2024)

Liu, T.; Liu, Z.; Yuan, Y.; Liu, H.; Xian, W.; Xiang, S.; Yang, X.; Liu, Y.; Liu, S.; Zhang, M. et al.; Jiao, Y.; Cheng, S.; Doyle, J.; Xie, F.; Li, J.; Tian, Z.: Loss of Lateral suppressor gene is associated with evolution of root nodule symbiosis in Leguminosae. Genome Biology: Biology for the Post-Genomic Era 25 (1), 250 (2024)

Tao, Y.; Xian, W.; Bao, Z.; Rabanal, F.; Movilli, A.; Lanz, C.; Shirsekar, G.; Weigel, D.: Atlas of telomeric repeat diversity in Arabidopsis thaliana. Genome Biology: Biology for the Post-Genomic Era 25 (1), 244 (2024)

Cheng, S.; Feng, C.; Wingen, L.; Cheng, H.; Riche, A.; Jiang, M.; Leverington-Waite, M.; Huang, Z.; Collier, S.; Orford, S. et al.; Wang, X.; Awal, R.; Barker, G.; O'Hara , T.; Lister, C.; Siluveru, A.; Quiroz-Chávez, J.; Ramírez-González, R.; Bryant, R.; Berry, S.; Bansal, U.; Bariana, H.; Bennett, M.; Bicego, B.; Bilham, L.; Brown, J.; Burridge, A.; Burt, C.; Buurman, M.; Castle, M.; Chartrain, L.; Chen, B.; Denbel, W.; Elkot, A.; Fenwick , P.; Feuerhelm, D.; Foulkes, J.; Gaju, O.; Gauley, A.; Gaurav, K.; Hafeez, A.; Han, R.; Horler, R.; Hou, J.; Iqbal, M.; Kerton, M.; Kondic-Spica, A.; Kowalski, A.; Lage, J.; Li, X.; Liu, H.; Liu, S.; Lovegrove, A.; Ma, L.; Mumford, C.; Parmar, S.; Philp, C.; Playford, D.; Przewieslik-Allen , A.; Sarfraz, Z.; Schafer, D.; Shewry, P.; Shi, Y.; Slafer, G.; Song, B.; Song, B.; Steele, D.; Steuernagel , B.; Tailby, P.; Tyrrell, S.; Waheed, A.; Wamalwa, M.; Wang, X.; Wei, Y.; Winfield, M.; Wu, S.; Wu, Y.; Wulff, B.; Xian, W.; Xu, Y.; Xu, Y.; Yuan, Q.; Zhang, X.; Edwards, K.; Dixon, L.; Nicholson, P.; Chayut, N.; Hawkesford , M.; Uauy, C.; Sanders, D.; Huang, S.; Griffiths, S.: Harnessing landrace diversity empowers wheat breeding. Nature 632 (8026), pp. 823 - 831 (2024)

Monroe, J.; Murray, K.; Xian, W.; Srikant, T.; Carbonell-Bejerano, P.; Becker, C.; Lensink, M.; Exposito Alonso, M.; Klein, M.; Hildebrandt, J. et al.; Neumann, M.; Kliebenstein, D.; Weng, M.-E.; Imbert, L.; Ågren, J.; Rutter, M.; Fenster, C.; Weigel, D.: Reply to: Re-evaluating evidence for adaptive mutation rate variation. Nature 619 (7971), pp. E57 - E60 (2023)

Bao, Z.; Guarracino, A.; Rabanal, F.; Vorbrugg, S.; Xian, W.; Garrison, E.; Weigel, D.: Understanding mutational processes from Arabidopsis pangenome graphs. In 2025 Meeting on Biology of Genomes, p. 30. 38th Annual Meeting on Biology of Genomes 2025, Cold Spring Harbor, NY, USA, May 06, 2025 - May 10, 2025. (2025)

Bao, Z.; Rabanal, F.; Guarracino, A.; Vorbrugg, S.; Xian, W.; Movilli, A.; Teasdale, L.; Murray, K.; Shirsekar, G.; Tao, Y. et al.; Lucke, M.; Garrison, E.; Weigel, D.: Understanding mutational processes from Arabidopsis pangeome graphs. In 34th International Conference on Arabidopsis Research (ICAR 2024), C12-2, p. 156. 34th International Conference on Arabidopsis Research (ICAR 2024), San Diego, CA, USA, July 15, 2024 - July 19, 2024. (2024)

Xian, W.: Re-visiting the somatic mutation rate in long-lived oak tree. PhD Students’ Symposium 2024, Tübingen, Germany (2024)

Xian, W.; Carbonell-Bejerano, P.; Rabanal, F.; Bezrukov, I.; Reymond, P.; Weigel, D.: Minimizing detection bias of somatic mutations in a highly heterozygous oak genome. (submitted)

Xian, W.; Bao, Z.; Vorbrugg, S.; Tao, Y.; Movilli, A.; Bezrukov, I.; Weigel, D.: The structure of mitochondrial genomes is associated with geography in Arabidopsis thaliana. (submitted)

The 1001 Genomes Plus Consortium; Alonso-Blanco, C.; Ashkenazy, H.; Baduel, P.; Bao, Z.; Becker, C.; Caillieux, E.; Colot, V.; Crosbie, D.; De Oliveira, L. et al.; Fitz, J.; Fritschi, K.; Grigoreva, E.; Guo, Y.; Habring, A.; Henderson, I.; Hou, X.-H.; Hu, Y.; Igolkina, A.; Kang, M.; Kemen, E.; Kersey, P.; Kornienko, A.; Lian, Q.; Liu, H.; Liu, J.; Lucke, M.; Mayjonade, B.; Mercier, R.; Mollá Morales, A.; Movilli, A.; Murray, K.; Naish, M.; Nordborg, M.; Rabanal, F.; Roux, F.; Schandry, N.; Schneeberger, K.; Schwab, R.; Shirsekar, G.; Sushko, S.; Tao, Y.; Teasdale, L.; Vorbrugg, S.; Weigel, D.; Xian, W.: The 1001G+ project: A curated collection of Arabidopsis thaliana long-read genome assemblies to advance plant research. (submitted)

Vorbrugg, S.; Bezrukov, I.; Bao, Z.; Xian, W.; Weigel, D.: Gfa2bin enables graph-based GWAS by converting genome graphs to pan-genomic genotypes. (submitted)

Xian, W.; Bezrukov, I.; Bao, Z.; Vorbrugg, S.; Gautam, A.; Weigel, D.: TIPP_plastid: A User-Friendly Tool for De Novo Assembly of Organellar Genomes with HiFi Data. (submitted)

Monroe, J.; Murray, K.; Xian, W.; Carbonell-Bejerano, P.; Fenster, C.; Weigel, D.: Report of mutation biases mirroring selection in Arabidopsis thaliana unlikely to be entirely due to variant calling errors. (submitted)