Publications of AN Lupas

Koretke, K.; Volker, C.; Bower, M.; Lupas, A.: Molecular Evolution of Histidine Kinases. In: Histidine Kinases in Signal Transduction, 23, pp. 483 - 506 (Eds. Inouye, M.; Dutta, R.). Acadenic Press, Amsterdam, The Netherlands (2003)

Volker, C.; Lupas, A.: Molecular Evolution of Proteasomes. In: The Proteasome: Ubiquitin Protein Degradation Pathway, pp. 1 - 22 (Eds. Zwickl, P.; Baumeister, W.). Springer, Berlin, Germany (2002)

Lupas, A.; Baumeister, W.: The 20 S Proteasome. In: Ubiquitin and the Biology of the Cell, pp. 127 - 146 (Eds. Peters, J.-M.; Harris, J.; Finley, D.). Plenum Press, New York, NY, USA (1998)

Lupas, A.: Prediction and Analysis of Coiled-coil Structures. In: Computer Methods for Macromolecular Sequence Analysis, 30, pp. 513 - 525 (Ed. Doolittle, R.). Academic Press, San Diego, CA, USA (1996)

Nieselt, K.; Pfeifer, N.; Lupas, A.; Kohlbacher, O. (Eds.): Poster abstracts of the 25th German Conference on Bioinformatics. German Conference on Bioinformatics (GCB 2017), Tübingen, Germany, September 18, 2017 - September 21, 2017. (2017), 63 pp.

Huson, D.; Kohlbacher, O.; Lupas, A.; Nieselt, K.; Zell, A. (Eds.): German Conference on Bioinformatics GCB 2006 (Gesellschaft für Informatik: GI-Edition / Proceedings, 83). German Conference on Bioinformatics (GCB 2006), Tübingen, Germany, September 19, 2006 - September 22, 2006. Gesellschaft für Informatik e.V., Bonn, Germany (2006)

Alexander, L.; Lepore, R.; Kryshtafovych, A.; Adamopoulos, A.; Alahuhta, M.; Arvin, A.; Bomble, Y.; Böttcher, B.; Breyton, C.; Chiarini, A. et al.; Chinnam, N.; Chiu, W.; Fidelis, K.; Grinter, R.; Gupta, G.; Hartmann, M.; Hayes, C.; Heidebrecht, T.; Ilari, A.; Joachimiak, A.; Kim, Y.; Linares, R.; Lovering, A.; Lunin, V.; Lupas, A.; Makbul, C.; Michalska, K.; Moult, J.; Mukherjee, P.; Nutt, W.; Oliver, S.; Perrakis, A.; Stols, L.; Tainer, J.; Topf, M.; Tsutakawa, S.; Valdivia-Delgado, M.; Schwede, T.: Target highlights in CASP14: Analysis of models by structure providers. 14th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP14), 2020-05 - 2020-09. Proteins: Structure, Function, and Genetics 89 (12), pp. 1647 - 1672 (2021)

Kryshtafovych, A.; Moult, J.; Albrecht, R.; Chang, G.; Cao, K.; Fraser, A.; Greenfield, J.; Hartmann, M.; Herzberg, O.; Joosts, I. et al.; Leiman, P.; Linden, S.; Lupas, A.; Nelson, D.; Rees, S.; Shang, X.; Sokolova, M.; Tidow, H.: Computational models in the service of X-ray and cryo-electron microscopy structure determination. 14th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP14), 2020-05 - 2020-09. Proteins: Structure, Function, and Bioinformatics 89 (12), pp. 1633 - 1646 (2021)

Millán, C.; Keegan, R.; Pereira, J.; Sammito, M.; Simpkin, A.; McCoy, A.; Lupas, A.; Hartmann, M.; Rigden, D.; Read, R.: Assessing the utility of CASP14 models for molecular replacement. 14th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP14), 2020-05 - 2020-09. Proteins: Structure, Function, and Bioinformatics 89 (12), pp. 1752 - 1769 (2021)

Pereira, J.; Simpkin, A.; Hartmann, M.; Rigden, D.; Keegan, R.; Lupas, A.: High-accuracy protein structure prediction in CASP14. 14th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP14), 2020-05 - 2020-09. Proteins: Structure, Function, and Bioinformatics 89 (12), pp. 1687 - 1699 (2021)

Kryshtafovych, A.; Moult, J.; Baslé, A.; Burgin, A.; Craig, T.; Edwards, R.; Fass, D.; Hartmann, M.; Korycinski, M.; Lewis, R. et al.; Lorimer, D.; Lupas, A.; Newman, J.; Peat, T.; Piepenbrink, K.; Prahlad, J.; van Raaij, M.; Rohwer, F.; Segall, A.; Seguritan, V.; Sundberg, E.; Singh, A.; Wilson, M.; Schwede, T.: Some of the most interesting CASP11 targets through the eyes of their authors. Eleventh Meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP11), Riviera Maya, Mexico, December 07, 2014 - December 10, 2014. Proteins: Structure, Function, and Bioinformatics 84 (S1), pp. 34 - 50 (2016)

Kopec, K.; Alva, V.; Lupas, A.: Bioinformatics of the TULIP domain superfamily. Models of Dementia: the Good, the Bad and the Future, Cambridge, UK, December 15, 2010 - December 17, 2010. Biochemical Society Transactions 39 (4), pp. 1033 - 1038 (2011)

Lupas, A.: At the Origin of Life: How Did Folded Proteins Evolve? In: Research in Computational Molecular Biology: 12th Annual International Conference, RECOMB 2008, Singapore, March 30 - April 2, 2008, Proceedings, p. 272 (Eds. Vingron, M.; Wong, L.). 12th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2008), Singapore, March 30, 2008 - April 02, 2008. Springer, Berlin, Germany (2008)

Koretke, K.; Russell, R.; Lupas, A.: Fold recognition from sequence comparisons. Fourth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP4), Pacific Grove, CA, USA, 2000. Proteins: Structure, Function, and Bioinformatics 45 (S5), pp. 68 - 75 (2001)

Koretke, K.; Russell, R.; Copley, R.; Lupas, A.: Fold recognition using sequence and secondary structure information. Third Meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP3), Pacific Grove, CA, USA, 1998. Proteins: Structure, Function, and Bioinformatics 37 (S3), pp. 141 - 148 (1999)

Maksymenko, K.; Skokowa, J.; Lupas, A.; ElGamacy, M.: A complementarity-driven approach to de novo design of protein binders. In 2nd BioExcel Conference on Advances in Biomolecular Simulations, p. 31. 2nd BioExcel Conference on Advances in Biomolecular Simulations, Brno, Czech Republic, October 20, 2024 - October 23, 2024. (2024)

Lupas, A.: Transmembrane signal transduction along a coiled-coil backbone. In 77th Annual Meeting of the Society of General Physiologists. 77th Annual Meeting of the Society of General Physiologists (SGP 2024), Woods Hole, MA, USA, September 04, 2024 - September 08, 2024. (2024)

Hu, Y.; Schwab, S.; Escudeiro, P.; van Heesch, T.; Vreede, J.; Hartmann, M.; Lupas, A.; Dame, R.; Alva, V.; Hernandez Alvarez, B.: Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. In Molecular Origins of LIFE, p. 59. Molecular Origins of LIFE (MOM 2024), München, Germany, July 19, 2024 - July 20, 2024. (2024)

Coles, M.; Dunin-Horkawicz, S.; Hartmann, M.; Lupas, A.: Revisiting HAMP in the AlphaFold age. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 12. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)

Dobbelstein, A.; Lupas, A.; Alva, V.: Variety of domains in trimeric autotransporter adhesins. In 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins, p. 17. 8th Alpbach Workshop: Coiled Coil, Fibrous and Repeat Proteins , Alpbach, Austria, September 04, 2022 - September 09, 2022. (2022)